Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27490 400 / 6e-143 3'-5'-exoribonuclease family protein (.1) AT3G61620 110 / 2e-29 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT3G46210 64 / 4e-12 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT5G14580 44 / 9e-05 polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041318 [exp] 480 / 4e-174 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10005148 [exp] 100 / 7e-25 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 97 / 7e-24 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10000255 [exp] 70 / 2e-14 AT3G61620 280 / 4e-97 3'-5'-exoribonuclease family protein (.1.2) Lus10009221 [exp] 66 / 2e-12 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10037991 [exp] 60 / 2e-10 AT3G46210 377 / 1e-133 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10022250 [exp] 54 / 5e-08 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 53 / 1e-07 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001173 [exp] 46 / 1e-05 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G212500 [exp] 422 / 3e-151 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 417 / 2e-149 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.014G094300 [exp] 114 / 2e-30 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.018G043600 [exp] 61 / 7e-11 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.001G347900 [exp] 49 / 2e-06 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G166200 [exp] 44 / 5e-05 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10037395 pacid=23152622 polypeptide=Lus10037395 locus=Lus10037395.g ID=Lus10037395.BGIv1.0 annot-version=v1.0 ATGGCATCAAAAGCCACTACAGCAGCTCCTACCACATACTCCCCGACTCCGACGTTGAAAAAATCCCGGCCTCCCATCTTCAAAGACTCCGACGTCGATT GGGCCCGACCCGACGGCCGAGGGTTTCATCAGTGCCGCCCCGCTTTTTTCAGAACAGGTGCTGTAAATGTTGCTGCTGGATCTGCCTATGCCGAGTTTGG AAACACAAAGGTCATTGTGTCTGTATTTGGACCGAGAGAAAGCAAGAAAGCAATGATGTATAGTGATGTGGGTCGGTTAAACTGCAATGTTAGCTACACA AATTTTGCCACCCCAGTGCGTGGTCAGGAAACAGACAATAAAGAATTATCATCAATGCTTCATAAAGCTCTCGAGGGTGCCATATTGCTGGAAACTTTCC CCAAGACAACAGTAGATGTTTTCGCCTTGGTGTTAGAGTCTGGTGGCAGTGATCTTCCTGTTGTGGTGTCTTGTGCAAGCCTTGCTCTGGCTGATGCGGG GATTATGATGTATGACCTTGTTGCTGGAGTTTCTGTGGCCTCTCTGGGGAAAAACCTGATGATCGATCCAGTGCAGGAAGAGGAAAGCTGTCAAGATGGA AGTTTGATGCTGACTTGTATGCCTTCCCGGTACGAGGTTACCCAGCTAACCATTACAGGGGAATGGTCATCATCATATATGAATGAGGCAATGCAGCTGT GTCTGGAAGCATGCTCGAAACTTGCCAAGATCATGAGGTCTTGTCTGAAAGATGCTGCTGGCCAAGATTAG
AA sequence Show only first row Show all	>Lus10037395 pacid=23152622 polypeptide=Lus10037395 locus=Lus10037395.g ID=Lus10037395.BGIv1.0 annot-version=v1.0 MASKATTAAPTTYSPTPTLKKSRPPIFKDSDVDWARPDGRGFHQCRPAFFRTGAVNVAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYT NFATPVRGQETDNKELSSMLHKALEGAILLETFPKTTVDVFALVLESGGSDLPVVVSCASLALADAGIMMYDLVAGVSVASLGKNLMIDPVQEEESCQDG SLMLTCMPSRYEVTQLTITGEWSSSYMNEAMQLCLEACSKLAKIMRSCLKDAAGQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27490			3'-5'-exoribonuclease family p...		Lus10037395 [exp]	0	1
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	2.6	0.9243
AT3G21400			unknown protein		Lus10006520 [exp]	3.0	0.8803
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	7.3	0.8938
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	8.1	0.8957
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	8.5	0.8868
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	8.9	0.8809
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	10.8	0.8933
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	11.4	0.8671
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	11.6	0.8922
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	12.4	0.8838

Compare expression of checked genes

Lus10037395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.