Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60700 1113 / 0 glycosyltransferase family protein 2 (.1) AT1G08040 584 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 568 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G67850 545 / 0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 521 / 3e-173 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G13000 493 / 2e-162 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G26440 493 / 2e-162 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G24570 463 / 2e-151 Protein of unknown function (DUF707) (.1) AT4G12840 281 / 2e-84 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT4G18530 250 / 2e-73 Protein of unknown function (DUF707) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041317 [exp] 1698 / 0 AT5G60700 1204 / 0.0 glycosyltransferase family protein 2 (.1) Lus10041316 [exp] 779 / 0 AT2G28310 590 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10016095 [exp] 697 / 0 AT2G28310 604 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10021463 [exp] 696 / 0 AT2G28310 594 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Lus10011414 [exp] 536 / 1e-178 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 525 / 5e-175 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 502 / 6e-166 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10003659 [exp] 494 / 5e-163 AT3G27470 563 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10022287 [exp] 473 / 2e-154 AT3G27470 548 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G010900 [exp] 1558 / 0 AT5G60700 1170 / 0.0 glycosyltransferase family protein 2 (.1) Potri.004G212000 [exp] 1543 / 0 AT5G60700 1167 / 0.0 glycosyltransferase family protein 2 (.1) Potri.009G011000 [exp] 572 / 0 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.010G047200 [exp] 548 / 0 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 548 / 0 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.017G065200 [exp] 528 / 7e-176 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.019G053000 [exp] 268 / 6e-80 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.011G045300 [exp] 261 / 4e-77 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.014G175800 [exp] 258 / 3e-76 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.004G036800 [exp] 256 / 2e-75 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10037396 pacid=23152478 polypeptide=Lus10037396 locus=Lus10037396.g ID=Lus10037396.BGIv1.0 annot-version=v1.0 ATGGGGATGAGCAGGAGCTTCAAGAGTGGGGATTACTTGGAAGGAATGCTCAGTGATTACGTCGGTGGAGGGAAAGGCAGTAACAACAAGCTCAACAAAT CTGCATCAACAAGAACAACAAGTGCAGCTTCTTCAGCTAAGCTTGTCACAGTCATGACTTGCCTCCAATTTGCATTTGCAGTCTATGCAACTTTCCTCCT CTACTACATGAGCCCCACCATAGACCTCAGGACCAAACCCGACTTTACTTGGGCCACAAGGTTCGCTCAGAACTGGAAGCGCCACTTCGTAATCTCTCCC CATGTCGTTGGCAGGTACCAGGAGTCTACTGCATCCTCATTGGTTAAGGAAGATCAAGAGGTGATGATGGTTCAGCATCAGAACCCTTCCCAAGTCTGCG AGCACGAGAAGATCGATTTCTTGCAGAAGAAGTCAACCGACGCGCAGATGATCAAGCTGAAGAGGGAGCTCTATGACGAGGTGTTGAGTTTCCAGAGCAA ATCAGTAGGGACCGAGACCCTTGTCCAGCTCATGACGATGAATTCCAGATGGGACATTCGGAACCCGATCAGGCCGAAAGTGACTGTGATCCTCAACCAT TTCAAAAGGAAGACGCTTTGTGCTCAGCTGGAGTCCTTGCTCCACCAAACGCTGCCGTTCCACCACGTTTGGGTGCTTGCATTTGGTTCCCCAAATGAAA TCTCTCTCAAGAGGATCGTCGATAGCTACAACGATTCGCGAATCAGCTTCGTGAGCTCCACCTACGATTTCAAGTACTACGGGAGGTTCCAGATGGCTCT GCAGACTGAGTCTGATCTGGTCTATGTTGTGGATGATGACATGATCCCGGGGACCAGAATGCTGCAGATCTTGTCTCATGTTGCTGGAACTGAGAAGTAT AAGAATTCTGTGTTGGGAAGCATTGGAAGGATCTTGCCATTCAGGCAGAAGGATTATACTTTCCCAAGCTACAGAAAGTTCAGGTCAAAGGAAGCTGGAC TTTACCTCCCTGATCCTGCTTATGACATTACAGTTGACAAAATTGTGCAGGTTGACTTCCTTTCAAGCTCTTGGTTTCTGTCTGCTGAGCTTGTCAGGAC TCTTTTCATTGAGACCCCTCTCACTTTCATGACTGGGGAAGATCTCCATCTCAGCTACCAGCTTCAAAAGTACAGAAATGCAGGATCATACGTGCTTCCA ATAGATCCAAACGACAAGGAAACATGGGGAGACAGCGAGCACAGACTTGCCTACGTGTCCGAGACGACAGTGATATTCAAGGACGTGGTCCAAGTCCGGG ATGATCAATGGTGGAAAGCCATGTCTGCTGGATACGTGACACAGTGGGCTATGATGTACCCGCAGAAGATCGATGCACTCTTCTACGCACATTCAGTCGA CGAGGTGAAGGCCCTGATGCCACTCCTCGAGAAGTTCCGGTCCACTGTGGGGAAGAAGGCCTACATTGCTATACCAGGAGGAAGGTTCTGCCCTTGTGAG GATGCTGCAACTGCACTTCGTTGGCCTAAGCTGGTTTGCAAGGAGAGGAGGTTCAAGATATTCGATCTCGGAGTTGGTGCATTGTCCGGAGCATCGAAAT CGGAGGTTCCAGTGGTTCAATCGGTATACTCCAGCATGAAAGGGCTGATCAGAATGCACAATCCAAGTGTTGTCATCACGGTTTCTGATGTTGATGCTGA TGTGAAGAAAGCTCTCAGAATGGCTGTTGAGAGTAATAATGGTACTACAACCTTTGTTCTTCTGCCTAGGCCTTCAATTCCCAAAGTCCTCTGGATGGCT GATCTTAGATCCTCTGCCTTGCCAAATTGGAACAAGATGAGGATCTCAATCAACATAATCACACAAAACAGGGCATCATCCTTAACAAGACTCCTAAGCT CCCTCAGCAACGCATACTACCTAGGAGACGAAGTCCCAATCTCATTCAACATGGACAGCAAAGTCGACGAAGCAACAATTAAGCTAGTAACAACATTCAA CTGGCCACACGGTCCCAAGACACTGAGAAGAAGGATCATCCAAGGAGGCCTAATTCGAGCAGTCAGCGAAAGCTGGTACCCTTCCTCAGACGATGATTTC GGTCTCTTACTTGAAGACGACATCGAAGTCTCTCCTTACTACTACCTCTGGATCAAATACGCACTCTTGGCATACCACTACGACCCTCTGGTGTCCCTCC CCGAACTCTCTTCGATCTCACTCTATACTCCGAAACTCGTCGAAGTTGTGAAAGAAAGGCCGAAATGGAATGCGACGGAGTTTTTCAAAAGAATCCATCC GAACACGCCGTATCTCCACCAGCTGCCTTGCAGCTGGGGAGCAGTCTTCTTCCCCAAGCAATGGAGGGAGTTTTACGTCTACATGAATATGAGGTTCACG GAGGATGCCAAGTCGAACCCGGTCCAGATCCCAAAGTCGAGAACCAACGGGTGGCAGGCTTCGTGGAAGAAGTTTCTGATCGACATGATGTATTTGAGAG GGTATGTGAGTTTGTACCCGAATTTCCCCAACCAGGCGAGCTTCTCGACGAATCATATGGAGCCCGGTGCACACGTTTCGGCTAAGGACAATGTTGTGAA GCATAACAAGGCGGATTTCGAGGTGCCGTTGATTAAGGATGATTTCAAGGCGTTGCTTCCGAATGGGAAGTTTCCTCAGGCTTCTAAGTTGCCTTCGCTG AACTTGTTTAATCAGCCTGTTTCGCTGAAGGGTCTCAAGGCTGCTGGTGCTAAGCTCGGGCAGGATGTTTTGAAGTGTGATAATGCTACGGAGTGTGCTG CTACTGCTACTGTTTTCACTTTAACTGCCGCGCTCCGCTGTCTCATCTGCCCCAACTCTCGCACACTGCATCCGGTCCGATCTCCCTCAGCCTTACCGGC GTTGGGGCATACAATTGTTGAGAAAGAATCTGTCTTTCCAGCTCTTGTGCATTCTGTTGAAGTTCAAGACATACAACGTGCTCTGGCTGATGTCGGTCCT TTTTCCAGAAGAACAAACGACAGTACTAGGCTCATTATCACAGCACTTTTAGGAATTATCATTGGATTTCTTATTGGTGTTTCATTTCCATCTGCTTCCT TGTCTAAGATACACTTTCCTTCAGGGTTCATTAGTCCTTACGATATACCATCAATTGATGGAAGAAGATCTAATACAGGTGAACCTGAAAATCGCGAATC ATACAACATTCCTAAGATTCACGTTCCAACAAATCCCCGTGGTGCAGAGTCATTGCCTCCCGGAATTGTTGAGGCAGAAACTGACCTTTATTTGCGCAGA TTATGGGGTGATCCTAGTGAGGATCTGAAGAAGAAGCCGAAGTACTTAGTGACCTTTACAGTTGGTTGGGATCAAAGACACAACATAGATTTGGCCGTTC GAAAGTTTTCAGATGATTTCACAATCTTGCTTTTCCACTACGATGGTCGTGTAACTGAATGGGAAGTATTTGAGTGGTCAAAAACTGCAATTCATATAAG TGTGAAAAGGCAAACAAAATGGTGGTATGCTAAGAGATTTCTGCATCCAGATGTTGTTGCACCATACGAATATATTTTCATATGGGATGAAGATCTTGGA GTAGAACATTTTAATGCAGACAAGTACATTCACTTGGTTAAAAAGCATGGGCTAGAGATCTCTCAACCGGGACTTGAGCCCAATAATGGTCTTACGTGGC AGATGACAAAGAGGCTAGGTGACCGGGAGGTTCACAAGGGCACAGAAGAGAAACCAGGCTGGTGCAGCGACCCACATTTACCTCCTTGTGCTGCCTTTGT GGAAATCATGGCGCCTGTGTTTTCTCGTAATGCATGGAGATGTGTGTGGCATATGATCCAGAATGACTTGGTGCATGGATGGGGATTGGATTTTGCTCTG AGAAGATGTGTAGAGCCTGCGCATGAGAAAATAGGAGTGGTTGATTCACAGTGGATTATACATCAAGTAATCCCTTCTCTGGGGAGCCAGGGCCAATCTG AGAAAGGAAAAGCACCATGGGAAGGCGTGAGAGCAAGGTGTAAGAGTGAATGGTCCATGTTCCAGGAGCGCCTACTGCGTGCCGACAAAGCATACTTCTT GAGCAGTACTAGCCGCACTGCTAATGCTGACAAGGAATACTTGGATCGTCTGAAGGGGGTTAAAAACTGA
AA sequence Show only first row Show all	>Lus10037396 pacid=23152478 polypeptide=Lus10037396 locus=Lus10037396.g ID=Lus10037396.BGIv1.0 annot-version=v1.0 MGMSRSFKSGDYLEGMLSDYVGGGKGSNNKLNKSASTRTTSAASSAKLVTVMTCLQFAFAVYATFLLYYMSPTIDLRTKPDFTWATRFAQNWKRHFVISP HVVGRYQESTASSLVKEDQEVMMVQHQNPSQVCEHEKIDFLQKKSTDAQMIKLKRELYDEVLSFQSKSVGTETLVQLMTMNSRWDIRNPIRPKVTVILNH FKRKTLCAQLESLLHQTLPFHHVWVLAFGSPNEISLKRIVDSYNDSRISFVSSTYDFKYYGRFQMALQTESDLVYVVDDDMIPGTRMLQILSHVAGTEKY KNSVLGSIGRILPFRQKDYTFPSYRKFRSKEAGLYLPDPAYDITVDKIVQVDFLSSSWFLSAELVRTLFIETPLTFMTGEDLHLSYQLQKYRNAGSYVLP IDPNDKETWGDSEHRLAYVSETTVIFKDVVQVRDDQWWKAMSAGYVTQWAMMYPQKIDALFYAHSVDEVKALMPLLEKFRSTVGKKAYIAIPGGRFCPCE DAATALRWPKLVCKERRFKIFDLGVGALSGASKSEVPVVQSVYSSMKGLIRMHNPSVVITVSDVDADVKKALRMAVESNNGTTTFVLLPRPSIPKVLWMA DLRSSALPNWNKMRISINIITQNRASSLTRLLSSLSNAYYLGDEVPISFNMDSKVDEATIKLVTTFNWPHGPKTLRRRIIQGGLIRAVSESWYPSSDDDF GLLLEDDIEVSPYYYLWIKYALLAYHYDPLVSLPELSSISLYTPKLVEVVKERPKWNATEFFKRIHPNTPYLHQLPCSWGAVFFPKQWREFYVYMNMRFT EDAKSNPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHVSAKDNVVKHNKADFEVPLIKDDFKALLPNGKFPQASKLPSL NLFNQPVSLKGLKAAGAKLGQDVLKCDNATECAATATVFTLTAALRCLICPNSRTLHPVRSPSALPALGHTIVEKESVFPALVHSVEVQDIQRALADVGP FSRRTNDSTRLIITALLGIIIGFLIGVSFPSASLSKIHFPSGFISPYDIPSIDGRRSNTGEPENRESYNIPKIHVPTNPRGAESLPPGIVEAETDLYLRR LWGDPSEDLKKKPKYLVTFTVGWDQRHNIDLAVRKFSDDFTILLFHYDGRVTEWEVFEWSKTAIHISVKRQTKWWYAKRFLHPDVVAPYEYIFIWDEDLG VEHFNADKYIHLVKKHGLEISQPGLEPNNGLTWQMTKRLGDREVHKGTEEKPGWCSDPHLPPCAAFVEIMAPVFSRNAWRCVWHMIQNDLVHGWGLDFAL RRCVEPAHEKIGVVDSQWIIHQVIPSLGSQGQSEKGKAPWEGVRARCKSEWSMFQERLLRADKAYFLSSTSRTANADKEYLDRLKGVKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	0	1
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	1.4	0.9627
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	2.4	0.9440
AT5G04590		SIR	sulfite reductase (.1)		Lus10030131 [exp]	4.5	0.9398
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	6.2	0.9469
AT5G01160			RING/U-box superfamily protein...		Lus10021125 [exp]	7.1	0.9356
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	8.5	0.9397
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10029796 [exp]	8.5	0.9417
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	10.2	0.9387
AT5G20045			unknown protein		Lus10019440 [exp]	10.4	0.9346
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	10.6	0.9330

Compare expression of checked genes

Lus10037396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.