Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28370 251 / 3e-86 Uncharacterised protein family (UPF0497) (.1) AT2G37200 195 / 4e-64 Uncharacterised protein family (UPF0497) (.1) AT3G23200 126 / 3e-37 Uncharacterised protein family (UPF0497) (.1) AT3G53850 125 / 5e-37 Uncharacterised protein family (UPF0497) (.1) AT5G02060 106 / 2e-29 Uncharacterised protein family (UPF0497) (.1) AT3G50810 95 / 5e-25 Uncharacterised protein family (UPF0497) (.1) AT4G37235 79 / 1e-18 Uncharacterised protein family (UPF0497) (.1) AT1G49405 68 / 1e-14 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041312 [exp] 333 / 2e-118 AT2G28370 258 / 9e-89 Uncharacterised protein family (UPF0497) (.1) Lus10021469 [exp] 281 / 1e-97 AT2G28370 258 / 7e-89 Uncharacterised protein family (UPF0497) (.1) Lus10000718 [exp] 276 / 7e-96 AT2G28370 254 / 2e-87 Uncharacterised protein family (UPF0497) (.1) Lus10004698 [exp] 119 / 2e-34 AT3G53850 213 / 6e-72 Uncharacterised protein family (UPF0497) (.1) Lus10040264 [exp] 117 / 9e-31 AT3G55610 486 / 1e-165 delta 1-pyrroline-5-carboxylate synthase 2 (.1.2) Lus10022188 [exp] 101 / 2e-27 AT3G23200 206 / 3e-69 Uncharacterised protein family (UPF0497) (.1) Lus10016784 [exp] 87 / 7e-22 AT3G50810 150 / 2e-47 Uncharacterised protein family (UPF0497) (.1) Lus10010881 [exp] 85 / 3e-21 AT3G53850 143 / 2e-44 Uncharacterised protein family (UPF0497) (.1) Lus10024355 [exp] 84 / 4e-21 AT3G53850 147 / 7e-47 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014600 [exp] 275 / 2e-95 AT2G28370 256 / 2e-88 Uncharacterised protein family (UPF0497) (.1) Potri.004G211400 [exp] 265 / 1e-91 AT2G28370 221 / 2e-74 Uncharacterised protein family (UPF0497) (.1) Potri.016G090100 [exp] 224 / 2e-75 AT2G28370 216 / 3e-72 Uncharacterised protein family (UPF0497) (.1) Potri.006G090400 [exp] 127 / 1e-37 AT3G53850 193 / 5e-64 Uncharacterised protein family (UPF0497) (.1) Potri.010G198700 [exp] 122 / 1e-35 AT3G53850 206 / 5e-69 Uncharacterised protein family (UPF0497) (.1) Potri.009G110200 [exp] 111 / 1e-31 AT3G50810 165 / 5e-53 Uncharacterised protein family (UPF0497) (.1) Potri.004G149332 [exp] 108 / 2e-30 AT3G50810 145 / 3e-45 Uncharacterised protein family (UPF0497) (.1) Potri.008G165500 [exp] 105 / 4e-29 AT3G23200 174 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Potri.010G073000 [exp] 103 / 3e-28 AT3G23200 182 / 7e-60 Uncharacterised protein family (UPF0497) (.1) Potri.007G033600 [exp] 72 / 3e-16 AT4G37235 133 / 1e-40 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10037399 pacid=23152502 polypeptide=Lus10037399 locus=Lus10037399.g ID=Lus10037399.BGIv1.0 annot-version=v1.0 ATGAGTGTGAGCCACGCGTCGGTTCACCCAGTGGAGGATCCTCCCACGACGGACGGCGGAAACAACAACGACAATAACAATATTCCGGCGAGAATTCGGA TGAAGGATGTACAAGGGATGCCAGGGACCAAAGGGGGACTAGCTTTGCGAGTGGCTCAGTTCTTCTTTGCGACTGTCGCCCTTGTTGTCATGTCCACCAC CAGTGATTTCCCTTCTGTCACTGCCTTCTGCTACCTTGTTGCAGCAGCTGGCTTACAGTGTCTGTGGAGCCTTTCTCTGGCCATTGTTGACATATATGCC ATTCTGGTGATGCGTTCCTTACAGAATCATCAAGTTGTCTGCTTCTTTACGATTGGTGACGGGGTTACTTCCACGCTCACTTTTGCAGCAGCATGTGCAT CTGCGGGGATAACAGTCCTTATCGACAACGATCTGGGTAGCTGCGGGGATAACCACTGCCTACAGTTTGAAACAGCTACGGCAACAGCATTCATAAGCTG GTTCATGGCCTTGCCGTCCTTTCTTTTGAATTTCTGGTCGCTCGCATCGAGGTAG
AA sequence Show only first row Show all	>Lus10037399 pacid=23152502 polypeptide=Lus10037399 locus=Lus10037399.g ID=Lus10037399.BGIv1.0 annot-version=v1.0 MSVSHASVHPVEDPPTTDGGNNNDNNNIPARIRMKDVQGMPGTKGGLALRVAQFFFATVALVVMSTTSDFPSVTAFCYLVAAAGLQCLWSLSLAIVDIYA ILVMRSLQNHQVVCFFTIGDGVTSTLTFAAACASAGITVLIDNDLGSCGDNHCLQFETATATAFISWFMALPSFLLNFWSLASR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	0	1
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10025728 [exp]	2.6	0.8596
AT1G16180			Serinc-domain containing serin...		Lus10026111 [exp]	3.6	0.8887
AT5G38895			RING/U-box superfamily protein...		Lus10005084 [exp]	5.3	0.8655
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	5.8	0.8722
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	7.9	0.8717
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10038342 [exp]	8.1	0.8648
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	9.5	0.8612
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	11.7	0.8576
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	12.0	0.8476
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039032 [exp]	13.7	0.7850

Compare expression of checked genes

Lus10037399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.