Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07990 921 / 0 SIT4 phosphatase-associated family protein (.1) AT2G28360 874 / 0 SIT4 phosphatase-associated family protein (.1) AT3G45190 799 / 0 SIT4 phosphatase-associated family protein (.1) AT1G30470 684 / 0 SIT4 phosphatase-associated family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021468 [exp] 900 / 0 AT3G45190 851 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10016088 [exp] 839 / 0 AT3G45190 840 / 0.0 SIT4 phosphatase-associated family protein (.1) Lus10023354 [exp] 675 / 0 AT1G30470 918 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10038452 [exp] 659 / 0 AT1G30470 842 / 0.0 SIT4 phosphatase-associated family protein (.1.2.3) Lus10016089 [exp] 68 / 3e-14 AT2G28360 80 / 1e-19 SIT4 phosphatase-associated family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G014700 [exp] 1078 / 0 AT1G07990 1019 / 0.0 SIT4 phosphatase-associated family protein (.1) Potri.004G211500 [exp] 1026 / 0 AT1G07990 991 / 0.0 SIT4 phosphatase-associated family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04499 [flax] [poplar] SAPS SIT4 phosphatase-associated protein
Representative CDS sequence Show only first row Show all	>Lus10037400 pacid=23152301 polypeptide=Lus10037400 locus=Lus10037400.g ID=Lus10037400.BGIv1.0 annot-version=v1.0 ATGGACCGTTTGGCCAAAGTAAATGAATTTGTTCGTGATCTAAAGCTGTTAAAATGTTTGGCAGCTGCTGCTGCTTGCTGCCTTTACTTGTCGTTTTGTC TGCGTGCGCCTCTTTCGGCCCAGTTCTTCCTTCAACCTCCCCTCTCTTTTGTTCTTCCCGGTCAGGTCTTTTCTTTTCCATCTTGCTCTCCGACTGTGCG CCTAGGGTTTTTCAAAGCTGTAAGTCGTTTGGCAAACAGGCTTTACCCCAGCTACATCGTCCTCCTCCCTTCTTTCCTCACTGCTTTCCCCAAATTCCTC TTTACGTTCTTGCAGATCTGCTTCCAGCTACTTTCTGTCACTTACTCTCTCCGTAGTCATGTTTTGGAAGCTGCCTATGCTCTCTGCTTCCTCTCCTCTA TCCGGAGCAAGAATGATGTAGGAAATGTCGTGGCTGCTTCTTTGCCGTGTATCTATATAGCTATCAAGGGCTTGTCAAAAGTGGAGGCAGTACTGGATAA GGAGGATTTCACATTAGAAGAGCTTCTAGATGAGGAAGAGATAATCCAAGAATGCAAAGCTCTAAATAGTCGTCTAATTAACTTTTTACGTGACAGAGCG CAAGTGGAGCAGCTGCTTCGTTACATAATTGACAATCCTCCAGAAGATGCTGAAAATATACTAGCATTCAAGTTTCCTTTCATAGCCTGTGAGATATTCA CCTGTGAAATTGATGTCATCCTCAAAACTTTGGTGGAGGAAGAGGAGTTAATGGATCTCCTCTTTTCTTTCTTGGAACCAGACCGTCCTCACAGTGCTTT GCTGGCTGGCTATTTCAGCAAGGTTGTTGTTTGTCTGATGTTACACAAAACGGTTCCCCTAATGAACTATGTTCAGGCCCATCAGGAAGTTTTCTGTAAA TTGGTCGACTTAATTGGCTTCACTTCCATCATGGAGGTTTTGGTTCGGCTGGTGGGTGCCGATGACCATGTATATCACAATTTTATTGATGTGATGCAAT GGCTGGCAGATAGTAATTTGCTAGAGATGGTCATTGACAAATTGAGTCCTTCTTGCCCTCCAGAAGTTCAAGCTAATGCTGCAGAAACGCTATGTGCAAT TACTAGGAACACTGGATCAGCGTTGGGAGCAAAACTATCTAGTCCAAGTTTTGTTGCAAGGATATTTGGTCATGCATTGGAAAATTCACATTCAAATTCT GGTCTAATTCACTCACTATCAGTGTGCATCTCTTTACTGGATCCAAGAAGATTAACAAATTCATCGCTCTTGATGCATTCTTTCCGGGGTCAGCATATGT TTGAGGCTCCAGTAACTGTAAGCGCAGAGACCATAGATGCAATGTTGTCTCAACTAGGTGATTTGCTCAAGTTATTGAATGTGTCATCTGACGAGAAGAT TTTGCCCACGACATATGGACAGCTGAAGCCTCCATTGGGGAAGCATCGTCTGAAGATTGTGGAGTTCATTGCAATTTTGTTAAGAACTGGCAATGATACT GCTGGGAAGGAATTGGTCATCTCAGGAACCATTAAAAGAGTTGTTGATCTTTTCTTCGAGTACCCATTCAATAATGCCTTGCACCATCAAGTGGAAAGCA TTATATTTTCATGCTTGGAGACCAAGAGCGAAGCTGTAATTGATCATATATTTCATCAGTGTGACTTAGTAGGGAAGCTTCTTCAAACAGACAAGAACCC CACCTTCTCTGGTGACGAAAATCAGCCAACTTTAAATGCAGCTGGGAAGCGGGCTCCACTTTTGGGAAATCGTGGACACATTACCAGAATTTGTAATAAG CTTTGTCAGCTGGGAAGCAACAACAGCTCTATTCGTACATATTTGCAGGAAAATAGTGAATGGAATGATTGGCAAGCCAGTGTCTTGCAGGAGCGTAACA TTGTTGAAAACGTTTATCGCTGGGCATGTGGCCGCCCAACAGCATTGCAAGATAGAATCAGGGACAGCGACGAGGAAGAGTTTCGTGACAGAGATTATGA TGTAGCAGCTCTAGCAAACAACTTGAGTCAGGCCTTCGGCTACAACATTTACGGAAATGAGGGTGCTGAAGAGGAAAATAGTGGCCTCAATAGAGATGAT GAGGATGTATATTTTGACAATGAATCTGCTGAAGTAGTCGTATCATCAGTCAGGCTTGATGATGACCAAGGAAGCAGTCTATTCACAAACTCGAATTGGT TTGTGTTCCAAGAGGACCGGATTGGCGGTGCTCCTACCAGCACTTCAGCTATGGATGTAATGGAAGATATCAACTTCAACGGGGATGCCAACGGAGGCAA CATCATCCATAGTGGTGACAAGGTGGTGGTTGGAGAAAATGATGAAGTGAGTGGAAGCGAAGATCTAATAGGTGGTACATCCACTTCCAACACAGATGAC ATCAATGGCATTCTGAAAAATGATCCAATTCCTGAAGTTGACAAGGCAGATGTTCCTGAAGATGTCAGTTTCTTGAAGTTTGAGACTCCAGAGAATGAGG AATGTTTTGGGGACAGGTCTTTACCAGAATGGATAGGGTGGGGAGAGTCATCAGACCTGCAAATGGGTATGTCTAGTCTGAATCCATTTCTCGATCCCAA TCTCGCCGGTGAGGCTGAAATAGCAACACTGAATGCCAGTGAACCAACGGTAACAAATGGATCATCACCAACTAGGGACTCCAGCAGTGGTAGTTCATCG AGTCAGAGAGCAGCAGCTGGTTCGCCTTCATTGCTTGTCGGGGTGGAACCGGAGGAGACGGGGAAAGCAATGGAACCGGCGCTTAAGGAAGGAATAGTTG GTGCAGCAGGAGCTTTGAAGAGGACAAAATTGGCAGAGAAGGAAAATCCAGATGATGGGCTGAAGGAGTTTAATGATGCCAATTACTGGAAGGTTGATCG AGAGGTTGCTGTTCTGGAGTGA
AA sequence Show only first row Show all	>Lus10037400 pacid=23152301 polypeptide=Lus10037400 locus=Lus10037400.g ID=Lus10037400.BGIv1.0 annot-version=v1.0 MDRLAKVNEFVRDLKLLKCLAAAAACCLYLSFCLRAPLSAQFFLQPPLSFVLPGQVFSFPSCSPTVRLGFFKAVSRLANRLYPSYIVLLPSFLTAFPKFL FTFLQICFQLLSVTYSLRSHVLEAAYALCFLSSIRSKNDVGNVVAASLPCIYIAIKGLSKVEAVLDKEDFTLEELLDEEEIIQECKALNSRLINFLRDRA QVEQLLRYIIDNPPEDAENILAFKFPFIACEIFTCEIDVILKTLVEEEELMDLLFSFLEPDRPHSALLAGYFSKVVVCLMLHKTVPLMNYVQAHQEVFCK LVDLIGFTSIMEVLVRLVGADDHVYHNFIDVMQWLADSNLLEMVIDKLSPSCPPEVQANAAETLCAITRNTGSALGAKLSSPSFVARIFGHALENSHSNS GLIHSLSVCISLLDPRRLTNSSLLMHSFRGQHMFEAPVTVSAETIDAMLSQLGDLLKLLNVSSDEKILPTTYGQLKPPLGKHRLKIVEFIAILLRTGNDT AGKELVISGTIKRVVDLFFEYPFNNALHHQVESIIFSCLETKSEAVIDHIFHQCDLVGKLLQTDKNPTFSGDENQPTLNAAGKRAPLLGNRGHITRICNK LCQLGSNNSSIRTYLQENSEWNDWQASVLQERNIVENVYRWACGRPTALQDRIRDSDEEEFRDRDYDVAALANNLSQAFGYNIYGNEGAEEENSGLNRDD EDVYFDNESAEVVVSSVRLDDDQGSSLFTNSNWFVFQEDRIGGAPTSTSAMDVMEDINFNGDANGGNIIHSGDKVVVGENDEVSGSEDLIGGTSTSNTDD INGILKNDPIPEVDKADVPEDVSFLKFETPENEECFGDRSLPEWIGWGESSDLQMGMSSLNPFLDPNLAGEAEIATLNASEPTVTNGSSPTRDSSSGSSS SQRAAAGSPSLLVGVEPEETGKAMEPALKEGIVGAAGALKRTKLAEKENPDDGLKEFNDANYWKVDREVAVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	2.2	0.8766
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	2.4	0.8690
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	4.9	0.8655
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	7.0	0.8556
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	7.9	0.8474
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	8.1	0.8407
AT3G47630			unknown protein		Lus10023590 [exp]	8.7	0.8340
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	8.7	0.8063
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10005185 [exp]	10.0	0.8641
AT1G23230			unknown protein		Lus10016701 [exp]	12.6	0.8531

Compare expression of checked genes

Lus10037400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.