Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72100 93 / 9e-22 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) AT1G22600 80 / 3e-17 Late embryogenesis abundant protein (LEA) family protein (.1) AT3G62580 50 / 3e-07 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041310 [exp] 204 / 2e-65 AT1G72100 144 / 9e-40 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10021473 [exp] 111 / 4e-28 AT1G72100 305 / 2e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10000723 [exp] 109 / 2e-27 AT1G72100 305 / 3e-98 late embryogenesis abundant domain-containing protein / LEA domain-containing protein (.1) Lus10025037 [exp] 53 / 2e-08 AT3G62580 341 / 7e-121 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10010016 [exp] 53 / 3e-08 AT3G62580 340 / 3e-120 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197800 [exp] 46 / 6e-06 AT3G62580 352 / 6e-125 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037401 pacid=23152609 polypeptide=Lus10037401 locus=Lus10037401.g ID=Lus10037401.BGIv1.0 annot-version=v1.0 ATGACCACTAATGCTCTGTCGATATTCCTAGTGTTGACCACACTGCTGGCCGCCGCAGTAGTCCAGTCAACGTCCGCCGCGGATGACGACGTTACAGTGC AGAAGGGTACTGGCGGCCACGTCCGAGCTGGGATTATTGATTGGATAACGGGAGTGGCGAACCTGTTGTCTGCGGCGACAGCATACGGTGCAACGGTGTG GATGACATTCATGTCGGCACATGGGTTAGGGTCAACGCTCCCGGGGCAGCAGTTCGGGATGGTAAAGAGCAAGTTGTATCCGGTCTACTTGAAGACCCTG GCTTTGTCCACCGCTATTGCTCTGTTTTGCCACCTGGTTGGTAATTGGTACAAAATTGATGTTCTTGTTCAGGGGTTGTGTCTTGTGACGGTGTTGACCG TGGTTGGGGTGAACGGGCTGTACTTGGAGCCGCTAGCGAGGAGGGCTATGCTGAAGAGGATGAAGGTTGAGAAAGAGGAAGGCAGGGGAGGCGGCGGCGC GTGGCAGATGGGGGATGTTGCGGGTGGTGATGAGCGGCTATTGACGGGAGGGGAAAAGGAGACGAGGTTGAATGGAAGGGTGAAGAGGCTGAATTTGTAT TCGACTTGGTTAAATCTGGTGTCGTTTTTGGGGCTGACGTGCCACCTTGTCTACCTCGGACGTTGTCTGAATTAA
AA sequence Show only first row Show all	>Lus10037401 pacid=23152609 polypeptide=Lus10037401 locus=Lus10037401.g ID=Lus10037401.BGIv1.0 annot-version=v1.0 MTTNALSIFLVLTTLLAAAVVQSTSAADDDVTVQKGTGGHVRAGIIDWITGVANLLSAATAYGATVWMTFMSAHGLGSTLPGQQFGMVKSKLYPVYLKTL ALSTAIALFCHLVGNWYKIDVLVQGLCLVTVLTVVGVNGLYLEPLARRAMLKRMKVEKEEGRGGGGAWQMGDVAGGDERLLTGGEKETRLNGRVKRLNLY STWLNLVSFLGLTCHLVYLGRCLN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72100			late embryogenesis abundant do...		Lus10037401 [exp]	0	1
AT3G57990			unknown protein		Lus10012013 [exp]	5.9	0.7267
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	9.3	0.7233
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	20.9	0.7222
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	26.5	0.7063
AT3G12320			unknown protein		Lus10024129 [exp]	26.8	0.6537
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	27.4	0.7029
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10018942 [exp]	27.9	0.6954
AT3G14280			unknown protein		Lus10037453 [exp]	28.6	0.7141
AT5G60460			Preprotein translocase Sec, Se...		Lus10036119 [exp]	28.7	0.6814
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10028264 [exp]	29.4	0.7064

Compare expression of checked genes

Lus10037401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.