Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60640 656 / 0 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 598 / 0 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 267 / 6e-82 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 263 / 1e-80 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT1G21750 233 / 1e-69 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 222 / 2e-65 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT2G47470 94 / 1e-20 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 87 / 4e-18 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G35620 86 / 1e-17 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G32920 85 / 2e-17 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022581 [exp] 762 / 0 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 751 / 0 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10041307 [exp] 528 / 0 AT5G60640 536 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 261 / 8e-80 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 240 / 6e-73 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Lus10018156 [exp] 213 / 5e-62 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 214 / 6e-62 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 207 / 4e-58 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 102 / 6e-23 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013600 [exp] 738 / 0 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.008G040100 [exp] 280 / 5e-88 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.001G183500 [exp] 270 / 5e-83 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.010G222100 [exp] 263 / 7e-82 AT3G54960 275 / 2e-87 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.002G082100 [exp] 222 / 2e-65 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 220 / 7e-65 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.002G198300 [exp] 99 / 2e-22 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G122800 [exp] 98 / 4e-22 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.019G082400 [exp] 97 / 2e-21 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.014G160000 [exp] 89 / 8e-19 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10037403 pacid=23152339 polypeptide=Lus10037403 locus=Lus10037403.g ID=Lus10037403.BGIv1.0 annot-version=v1.0 ATGTCGACCCGCCGCCTCCTCCTCCTCCTCCTCCTCTTCGCCCTCACCGCCTTCCTCCTCGCCTCTCCTTCCTTCTCCACTCAACACGGCAAGGCAGCCG ATGACGACGACGAGGATCTCAGCTTCCTCGATGACGACACCGATCACAGCGGACCTGCTTCCTCCTCACTCCACTACCCCGATTCCGATCACTTTGGCGA CGACGACGACACTGACTTCACCGGCGAAGCCGATGATTTCGACAACTTCGATAACTTCGACGACTCCGAAGATTCCGATCCCTACAAGCCTCCCGAGTTC GACGAGACGGACGTGGTGGTGCTGAACGAGGGCAATTTCAGCGATTTCGTCAAGGAACACAAGTTCGTGCTGGTTGAGTTCTATGCTCCCTGGTGCGGTC ACTGCCAGCAGCTTGCACCCGAGTATGCGGCGGCGGCGACGGAGTTGAAAGGAGAGGACGTGGCTTTGGCTAAAGTCGATGCCACGGAGGAGAACGAGCT GTCTCAGGAGTATGATGTGCAGGGTTTTCCTACTATCTATTTCTTCTCCGATGGTGTCCACAAGCCTTACTCTGGCCAGAGGACCAAAGATGCTATTGTT GCGTGGATTAAGAAGAAGACTGGACCTGGAATCTCCAACATCACCACATTGGATGATGCAGAGCGGATTTTAGCTTCCGACTCCAAAGTCGCCTTGGCTT ACCTTAACTCCTTGGTGGGTCCCGAGAGTCAAGAGCTTGCTGCTGCTTCAAGGCTTGAAGATGATGTTAACTTCTATCAAACTGTTAACCCTGATGTCGC CAAGCTTTTCCATCTTGACCCTGAAGCTAAACGTCCTGCATTGGTCATGATAAAAAAGGAGGCTGAGAAATTGAGTTTTTTTGACGGGAACTTCTCCAGG TCTGTTGTAGCGGAGTTTGTATTTGCCAACAAGCTTCCTCTGGTGACCATTTTCACCAGGGAAAATGCTCCATCAGTTTTTGAGAGTGAAATCAAGAAGC AGCTAATTTTATTTGCCGGCAAGAACGATTCGGAGAAAGTTCTTCCACGATTTCAAGAAGCTGCTAAACTGTTTAAGGGGAAGCTCATCTGTGTATTTGT GGATACGGACAATGAAGATGTTGGGAAACCCGTCGCTGAATATTTTGGTATCACAACTTCTCCCAAGGTAATTGGATACACTGGAAATGAAGATACAAAG AAATTTGTACTTGACAAAGAGGTTACCGTAGATAATATTAAGGAATTTGCCCAGGCCTTCATTGATGACACTCTCAAACCATTCTACAAGTCTGACCCAA TTCCGGAAACTAACGATGGAGATGTCAAAGTAGTGGTTGGGGACAACTTCGACGCTATCGTTTTGGACGAATCAAAAGATGTTCTCCTTGAGATCTATGC ACCTTGGTGTGGGCATTGCCAATCACTGGAACCAATTTACAACAAACTTGCTAAACATTTGAGGGGTATTGACTCGATTGTCATAGCTAAGATGGACGGC ACGACAAATGAACACCCCAGGGCAAAGTCTGATGGGTTCCCCACACTTCTTTTCTTCCCTGCCGGAAACAAGAGCTTCGACCCGGTGACTGTAGACACAG ACAGAACTGTGGTGGCATTCTACAAGTTCATCAAGAAACATGCATCCATCCCCTTCAAGCTCCAAAAGCCTGCATCCCCTACAAGTTCTTCGTCTCCGAA GCCAACATCCGAGACAGAGAGGTCCAATGTCATGAAGGAAGGTCAGGAAAGCGGCAGAAACAACGACGGAAAGGACGAATTGTGA
AA sequence Show only first row Show all	>Lus10037403 pacid=23152339 polypeptide=Lus10037403 locus=Lus10037403.g ID=Lus10037403.BGIv1.0 annot-version=v1.0 MSTRRLLLLLLLFALTAFLLASPSFSTQHGKAADDDDEDLSFLDDDTDHSGPASSSLHYPDSDHFGDDDDTDFTGEADDFDNFDNFDDSEDSDPYKPPEF DETDVVVLNEGNFSDFVKEHKFVLVEFYAPWCGHCQQLAPEYAAAATELKGEDVALAKVDATEENELSQEYDVQGFPTIYFFSDGVHKPYSGQRTKDAIV AWIKKKTGPGISNITTLDDAERILASDSKVALAYLNSLVGPESQELAAASRLEDDVNFYQTVNPDVAKLFHLDPEAKRPALVMIKKEAEKLSFFDGNFSR SVVAEFVFANKLPLVTIFTRENAPSVFESEIKKQLILFAGKNDSEKVLPRFQEAAKLFKGKLICVFVDTDNEDVGKPVAEYFGITTSPKVIGYTGNEDTK KFVLDKEVTVDNIKEFAQAFIDDTLKPFYKSDPIPETNDGDVKVVVGDNFDAIVLDESKDVLLEIYAPWCGHCQSLEPIYNKLAKHLRGIDSIVIAKMDG TTNEHPRAKSDGFPTLLFFPAGNKSFDPVTVDTDRTVVAFYKFIKKHASIPFKLQKPASPTSSSSPKPTSETERSNVMKEGQESGRNNDGKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10037403 [exp]	0	1
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	1.7	0.9744
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10008647 [exp]	2.0	0.9742
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10043020 [exp]	3.0	0.9653
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	3.2	0.9689
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10026676 [exp]	3.5	0.9687
AT5G08680			ATP synthase alpha/beta family...		Lus10035264 [exp]	4.2	0.9699
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	4.5	0.9693
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	5.1	0.9616
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	5.9	0.9679
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	6.6	0.9649

Compare expression of checked genes

Lus10037403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.