Plant FIBer expression Database

Lus10037404 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041306
[exp]
79 / 2e-18 AT3G45230 59 / 3e-11 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10037404 pacid=23152564 polypeptide=Lus10037404 locus=Lus10037404.g ID=Lus10037404.BGIv1.0 annot-version=v1.0
ATGCCGACGAAGTCTTCTTCCGTTCTAGTCTCCTTTCTTCTCTGCTGCTATCTCTCACTCAGCGCCGCCGTCACCGCACGGTCTCCTCCGATTCCTTCTC
CAGGACCCTCTCCGGCCGCAGATTCCGATTCCCCATTGTTGTCTCCTTCTCATTCTCCGTCTCCACTTTCCAGATCTCCTTCCCCTTCGCCGTCTCCTGA
CACCAACTCCCCTCCGGCTCCTCCATCCTCAGATCTACACTCCCCTGCCTCTGCTCCTTCTCCGGTTCAAGCTCCTTCTCCGGTTCAAGCTCCTTCTCCG
GTTCAAGCTGTTGGTGGAAGCAAGAGCGCAAATGCAGAAGCTGCGGATGTCAATCAGGCAGGTGATTCCTCGTCGTCGTCGTTATCCTCCGGGAAAAAGG
CCGGAATTGCCGTCGGGGTGGTGGCGGCGATGTGCGCAGTAGGGTTCGGAGGGTTGATTTACCGCAAGAGGCAGCAGAACGTTAGAAGGGCGCAGTATGG
TGGATACAGCGGCGGCGGGGTAGAACTCCTGTGA
AA sequence
>Lus10037404 pacid=23152564 polypeptide=Lus10037404 locus=Lus10037404.g ID=Lus10037404.BGIv1.0 annot-version=v1.0
MPTKSSSVLVSFLLCCYLSLSAAVTARSPPIPSPGPSPAADSDSPLLSPSHSPSPLSRSPSPSPSPDTNSPPAPPSSDLHSPASAPSPVQAPSPVQAPSP
VQAVGGSKSANAEAADVNQAGDSSSSSLSSGKKAGIAVGVVAAMCAVGFGGLIYRKRQQNVRRAQYGGYSGGGVELL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G45230 hydroxyproline-rich glycoprote... Lus10037404
[exp]
0 1
AT2G38360 PRA1.B4 prenylated RAB acceptor 1.B4 (... Lus10017425
[exp]
2.6 0.9263
AT2G32380 Transmembrane protein 97, pred... Lus10039668
[exp]
2.8 0.9112
AT3G10080 RmlC-like cupins superfamily p... Lus10014192
[exp]
3.7 0.9124
AT3G44150 unknown protein Lus10016181
[exp]
4.0 0.9207
AT5G18520 Lung seven transmembrane recep... Lus10009065
[exp]
4.5 0.9260
AT5G45420 MYB maMYB membrane anchored MYB, Duplica... Lus10039841
[exp]
5.5 0.9222
AT1G29330 ATERD2, AERD2, ... ARABIDOPSIS THALIANA ENDOPLASM... Lus10029263
[exp]
6.1 0.8607
AT5G66280 GMD1 "GDP-D-mannose 4,6-dehydratase... Lus10028373
[exp]
7.3 0.9103
AT2G18840 Integral membrane Yip1 family ... Lus10006966
[exp]
8.1 0.9142
AT1G71970 unknown protein Lus10028703
[exp]
8.4 0.8348

Lus10037404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.