Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55600 275 / 2e-93 Membrane fusion protein Use1 (.1) AT1G54110 248 / 8e-83 Membrane fusion protein Use1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041305 [exp] 398 / 8e-142 AT3G55600 324 / 3e-113 Membrane fusion protein Use1 (.1) Lus10030474 [exp] 40 / 8e-05 ND 33 / 0.008
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G133700 [exp] 287 / 5e-98 AT3G55600 287 / 1e-98 Membrane fusion protein Use1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09753 [flax] [poplar] Use1 Membrane fusion protein Use1
Representative CDS sequence Show only first row Show all	>Lus10037405 pacid=23152466 polypeptide=Lus10037405 locus=Lus10037405.g ID=Lus10037405.BGIv1.0 annot-version=v1.0 ATGAACAACGACAACAACAGATTCTCAGAACAGAAACTACCGGCAAGCTATTGTAGAAACAAGGAGAAAGACTACTGCTCATCTCTAATTCCTTCTGAGG AATTTGAAATGAGAATCAGTAAAACCGAGATAGATTTGAGGAGATTGCTCGCCGCTGCGCCTCAGCAGCAAAATCAAGCTAAACTTGTACATTATGTTGC TACTTTACGAGAACAACTGGAGCAGTTGGCTGCCGAGAGAACTCCCGATGGTTTGCCTAGAGTTTCCAAGGCTAAGGTGAATGATTATTCAGAGAAGATT GAAGCCGTTGCTTCAAAACTGGCGGCTGCACCATTGCCTGAGGTTGAGGTTCCAAGGGAACCTCTTTCTGGTTCTCCTAAGGGAAGTCATACTCTAGACG AAGAAAATCACCTTCCGTCTTCCCCGCGACTGAGAAGGAGAAATGTACAAGTCTCAAACGTTGAAGACAGAAGCCGTGACAATGCTCAGGTTGACGCCTC TGCCCCAGTCAAATTGGATGCTGCAGCACACATGCATATTGAAAAGCACAGAAAGCTGCAAGAGGATCTGACAGACGAGATGGTGGTTTTGGCACGACAG CTGAAAGAGAGCAGCCTGATGATGAGCCAGTCCGTGCAGGGTGCTGAAAAGGTACTGGATTCAACGGAGCATGCGATAGAGCAAAGCTTGGCAACAACGG GTCATGCAAATGTAAGGGCCGGGAAAGTGTTCTCACAAAGTTCGAAGACCTCGTGCCTCACTTGGCTTCTCATCTTTGCCATGACCTGCATTTTCGTCAT GGTCGTCCTTCTCATTCGTGTCACATAA
AA sequence Show only first row Show all	>Lus10037405 pacid=23152466 polypeptide=Lus10037405 locus=Lus10037405.g ID=Lus10037405.BGIv1.0 annot-version=v1.0 MNNDNNRFSEQKLPASYCRNKEKDYCSSLIPSEEFEMRISKTEIDLRRLLAAAPQQQNQAKLVHYVATLREQLEQLAAERTPDGLPRVSKAKVNDYSEKI EAVASKLAAAPLPEVEVPREPLSGSPKGSHTLDEENHLPSSPRLRRRNVQVSNVEDRSRDNAQVDASAPVKLDAAAHMHIEKHRKLQEDLTDEMVVLARQ LKESSLMMSQSVQGAEKVLDSTEHAIEQSLATTGHANVRAGKVFSQSSKTSCLTWLLIFAMTCIFVMVVLLIRVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55600			Membrane fusion protein Use1 (...		Lus10037405 [exp]	0	1
AT2G46550			unknown protein		Lus10023163 [exp]	3.2	0.8552
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	4.9	0.8171
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	7.3	0.8298
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10002300 [exp]	8.9	0.8112
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10042480 [exp]	8.9	0.8060
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	9.8	0.7853
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	13.4	0.8107
AT5G53340			Galactosyltransferase family p...		Lus10038830 [exp]	13.9	0.7783
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	14.0	0.7904
AT1G35510			O-fucosyltransferase family pr...		Lus10001545 [exp]	14.8	0.7319

Compare expression of checked genes

Lus10037405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.