Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60600 1260 / 0 HDS, ISPG, CSB3, CLB4, GcpE CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041304 [exp] 1418 / 0 AT5G60600 1307 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10022583 [exp] 1320 / 0 AT5G60600 1271 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Lus10021480 [exp] 1204 / 0 AT5G60600 1162 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013400 [exp] 1288 / 0 AT5G60600 1272 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3) Potri.004G210400 [exp] 1281 / 0 AT5G60600 1266 / 0.0 CONSTITUTIVE SUBTILISIN 3, CHLOROPLAST BIOGENESIS 4, 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04551 [flax] [poplar] GcpE GcpE protein
Representative CDS sequence Show only first row Show all	>Lus10037407 pacid=23152309 polypeptide=Lus10037407 locus=Lus10037407.g ID=Lus10037407.BGIv1.0 annot-version=v1.0 ATGGCGACTGGAGCTGTGCCAGCACCTTTTATGGGTCTCAAGACTGGAGACTCCAGCTTGGGATTTTCCAAGAGCATGGATTTTGTGAGAATCTCTGACG TCAGGAGGATCAAGTCCGGAAGGAGAAAAATCCCCATCATCAAATCCTCCACAGTTGAACTTCAGCCTGCCTCCGAGGGAAGCCCCTTGCTAGTTCCTAA ACAAAAGTACTGTGAGTCCATAAACAAGACTGTCAGAAGGAAAACCAGGACTGTGCTGGTTGGAGATGTTGCTCTTGGTAGTGATCACCCTATCAGGATT CAGACTATGACCACAACTGATACTAAAGATGTTGCAGCCACTGTTGAACAGGTGATGAAAATAGCTGATCAGGGAGCTGATATTGTTAGAATAACAGTAC AAGGGAAGAGAGAAGCAGATGCCTGTTTCGACATCAAGAACACTCTCGTGCAGAAGAACTACAATATACCTCTTGTTGCAGATATTCATTTTGCTCCATC TGTTGCGTTGCGGGTTGCTGAATGCTTTGATAAGATTCGTGTGAACCCTGGAAACTTTGCTGATAGGCGTGCTCAGTTTGAACAACTGGAGTACACAGAG GATGACTATCAGAAAGAACTTGAACACATTGAGCAGGTTTTCACTCCATTGGTGGAGAAATGTAAAAGGTATGGGAGAGCAATGCGTATTGGGACAAACC ATGGAAGCCTTTCAGATCGTATAATGAGTTACTATGGTGATTCACCTCAAGGAATGGTAGAGTCTGCATTTGAGTTTGCAAGGATTTGCAGAAAGTTGGA CTACCATAATTTTGTCTTCTCCATGAAAGCAAGCAACCCCGTGATCATGGTTCAGGCATATCGTCGGCTTGTTGCTGAAATGAATGCTCTGGGTTGGGAT TATCCCTTGCATTTGGGTGTTACTGAAGCTGGAGAAGGTGAGGATGGGAGGATGAAATCTGCTATTGGCATTGGAACCCTCCTTCAGGATGGTTTGGGTG ATACGATTAGAGTTTCACTTACAGAACCACCAGAGGAGGAGATAGATCCTTGTAGAAGGTTGGCCAACCTTGGTATGAAGGCTGCTGAACTTCAGCAAGG AGTGGAACCATTTGAAGAAAAGCACAGGCGATACTTTGATTTCCAGAGGCGAACTGGCCAATTGCCGGCGCAGAAGGAGGGTGAGGAAGTTGATTACAGA GGTGCCCTGCATCGTGATGGGTCTGTTCTGATGTCAGTTTCCTTGGACCAGTTAAAGGCACCTGAACTCCTTTACAAGTCCCTTGCAGCAAAGCTTATTG TTGGAATGCCTTTCAAGGATCTTGCGACAGTTGATTCAATCTTGTTGAGAAAACTGCCTCCAGTCGACGATACTGATGCTCGTCTGGCTCTCAAGAGGTT GATCGATATCAGCATGGGTGTAATAACCCCCTTGTCCGAGCAGCTTACAAAGCCGCTTCCCAATGCTATGGCTCTTGTTAACATTAAGGAGTTGTCCACT GGTGCATATAAGCTTTTGCCTGAAGGCACTAGATTGGTCGTATCTGTTCGTGGCGATGAACCTTACGATGAACTGGAAATTCTGAAAGACATCGATGCCA CAATGATCCTCCATGATGTACCATATGGAGAAGACAAAGTTGGCAGGGTTCAGGCTGCAAGAAGGTTGTTTGAGTATCTTCAAGAGAATGCTCTAGATTT CCCTGTTATTCACCATATCCAGTTTCCATCTGGGGTTCACAGAGATGACTTGGTAATTCGCGCAGGAGCAAATGCTGGCTCTCTTCTGGTAGATGGCCTA GGAGACGGTATTCTTATTGAAGCTCCAGGACAGGATTTCGATTTCCTGAGGAACACATCTTTCAACTTGCTACAAGGTTGCAGAATGAGGAACACAAAAA CGGAGTACGTCTCATGTCCGTCCTGCGGTAGAACCTTGTTTGATCTTCAAGAAATAAGTGCAGAAATTCGAGACAAGACATCCCACTTACCCGGTGTCTC GATTGCAATCATGGGTTGCATTGTGAATGGACCTGGGGAGATGGCTGATGCAGATTTTGGATACGTCGGTGGTGCTCCTGGAAAGATTGACCTTTACGTT GGGAAGACTGTGGTGAGAAGAGCGATAGCAATGGAGCATGCTACAGATGCACTGATAGATCTGATCAAAGAACATGGACGGTGGGTGGATCCTCCAAAGG AAGAGTGA
AA sequence Show only first row Show all	>Lus10037407 pacid=23152309 polypeptide=Lus10037407 locus=Lus10037407.g ID=Lus10037407.BGIv1.0 annot-version=v1.0 MATGAVPAPFMGLKTGDSSLGFSKSMDFVRISDVRRIKSGRRKIPIIKSSTVELQPASEGSPLLVPKQKYCESINKTVRRKTRTVLVGDVALGSDHPIRI QTMTTTDTKDVAATVEQVMKIADQGADIVRITVQGKREADACFDIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTE DDYQKELEHIEQVFTPLVEKCKRYGRAMRIGTNHGSLSDRIMSYYGDSPQGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRRLVAEMNALGWD YPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAELQQGVEPFEEKHRRYFDFQRRTGQLPAQKEGEEVDYR GALHRDGSVLMSVSLDQLKAPELLYKSLAAKLIVGMPFKDLATVDSILLRKLPPVDDTDARLALKRLIDISMGVITPLSEQLTKPLPNAMALVNIKELST GAYKLLPEGTRLVVSVRGDEPYDELEILKDIDATMILHDVPYGEDKVGRVQAARRLFEYLQENALDFPVIHHIQFPSGVHRDDLVIRAGANAGSLLVDGL GDGILIEAPGQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIRDKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYV GKTVVRRAIAMEHATDALIDLIKEHGRWVDPPKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10037407 [exp]	0	1
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10042716 [exp]	1.0	0.8916
AT2G44760			Domain of unknown function (DU...		Lus10029792 [exp]	2.4	0.8904
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	9.5	0.8430
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	10.1	0.8315
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	11.2	0.8261
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Lus10015481 [exp]	12.0	0.8393
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	14.2	0.8625
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	16.3	0.8551
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	16.8	0.8077
AT5G11840			Protein of unknown function (D...		Lus10027492 [exp]	19.5	0.8579

Compare expression of checked genes

Lus10037407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.