Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60710 308 / 5e-105 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 308 / 1e-104 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 305 / 2e-103 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 299 / 2e-101 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 288 / 5e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 73 / 1e-14 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 55 / 2e-08 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 47 / 7e-06 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041272 [exp] 319 / 4e-109 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 315 / 2e-107 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 308 / 9e-105 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 301 / 5e-102 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 279 / 5e-94 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 238 / 3e-77 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 225 / 3e-72 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 221 / 1e-70 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010566 [exp] 125 / 8e-36 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147700 [exp] 308 / 1e-104 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 303 / 6e-103 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 300 / 2e-101 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 240 / 4e-78 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 231 / 1e-74 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 231 / 2e-74 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 226 / 8e-73 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 79 / 9e-17 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 74 / 7e-15 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 73 / 1e-14 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10037408 pacid=23152353 polypeptide=Lus10037408 locus=Lus10037408.g ID=Lus10037408.BGIv1.0 annot-version=v1.0 ATGGTAAGAGTGAGTAGGATGAAGTTGGGTTCTCAAGGTCTGGAGATATCGGCACATGAGCTTGGTTGCATGTCTTACGGCACTGATCAGGACATTGCGG CTTTCATCCATCATGCGATCCACTCTGGCATCACTTTCTTCGATACCTCCGATATCTATGGCCCTCACACCAACGAGATCCTACTGGGCAAGGCTTTGAA GGGAGAGATTAGGGAGAAGGCTGAGTTGGGTACCAAATTCGGAATCATAAATGAACAAGGAGGGAAAGTCGGAGTTCGTGGAGACCCTGCTTATGTTGAA GAGATGAAGAAACTAGTAGAGGAGGGTAAAATAAAGTACAGTGGTCTATCAGAGGCGTCCGCTGAAACAATCAGAAGAGCTCATGCTGTTCATCCAATAA CATCCGTCCAGTTAGAGTGGTCCTTGTGGTCAAGAGATGTAGAAGAAGAGATCATCCCTGCTTGCAGGGAACTCGGGATTGGGATTGTTGCCTACAGTCC CCTTGGCCGCAGATTCTTTGCTTCTGGCCCTAAGCTTCTTGATAGCCTTGCTGACAGTGACATAAGGCGCAACCAAGGTTCCAGGGTGAGAACCTGGATC ACAACAAGACGCTGTTCGAGAAGGTTAGTGAAATCGCGAGCCGAAAAGGGTGCCCTCCGTCGCAGCCGGCACTTGCTTGGGTGCATCACCAGGGGGGAAG ATGTATGCCCCATTCCAGGGACGTCCAAGATTGAAAACTTGAAACAGAACATTGGAGCTCTGTCTGTCAAGCTCTCTCCTGAGGAAATGGGCTACAGAGG TGGTATTGCTGTTTGA
AA sequence Show only first row Show all	>Lus10037408 pacid=23152353 polypeptide=Lus10037408 locus=Lus10037408.g ID=Lus10037408.BGIv1.0 annot-version=v1.0 MVRVSRMKLGSQGLEISAHELGCMSYGTDQDIAAFIHHAIHSGITFFDTSDIYGPHTNEILLGKALKGEIREKAELGTKFGIINEQGGKVGVRGDPAYVE EMKKLVEEGKIKYSGLSEASAETIRRAHAVHPITSVQLEWSLWSRDVEEEIIPACRELGIGIVAYSPLGRRFFASGPKLLDSLADSDIRRNQGSRVRTWI TTRRCSRRLVKSRAEKGALRRSRHLLGCITRGEDVCPIPGTSKIENLKQNIGALSVKLSPEEMGYRGGIAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60730			NAD(P)-linked oxidoreductase s...		Lus10037408 [exp]	0	1
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	3.3	0.7656
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10037505 [exp]	4.2	0.7486
AT4G13780			methionine--tRNA ligase, putat...		Lus10010450 [exp]	12.6	0.7288
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10042805 [exp]	13.6	0.7012
AT4G36500			unknown protein		Lus10025997 [exp]	13.7	0.7040
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	16.1	0.6659
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	16.2	0.7346
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Lus10011319 [exp]	16.5	0.6345
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	17.0	0.6978
AT3G07450			Bifunctional inhibitor/lipid-t...		Lus10030541 [exp]	20.1	0.5917

Compare expression of checked genes

Lus10037408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.