Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60590 265 / 2e-88 DHBP synthase RibB-like alpha/beta domain (.1.2) AT3G01920 46 / 1e-05 DHBP synthase RibB-like alpha/beta domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041302 [exp] 461 / 2e-165 AT5G60590 311 / 2e-106 DHBP synthase RibB-like alpha/beta domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G025500 [exp] 304 / 7e-104 AT5G60590 350 / 9e-122 DHBP synthase RibB-like alpha/beta domain (.1.2) Potri.001G330100 [exp] 45 / 4e-05 AT3G01920 430 / 1e-152 DHBP synthase RibB-like alpha/beta domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01300 [flax] [poplar] Sua5_yciO_yrdC Telomere recombination
Representative CDS sequence Show only first row Show all	>Lus10037409 pacid=23152462 polypeptide=Lus10037409 locus=Lus10037409.g ID=Lus10037409.BGIv1.0 annot-version=v1.0 ATGAACATTCAGGCGGCTAGAATCTCCTCCACGCTCCCACTTCTAGTCTCTCGTTCTCGTTCTTCTCATACAGCTTTGGGAATTCGAAGCACCGCCTTCT TCCCCAATCCCATCCACGGAAAGGGAGTGGTTTCTTGCTCCACAAAAATGATGGCTTTGGAGTGCTGTAACCTGGAGGCATTTCAACGCGAGGACCAATT TGGAGGAGTGGTTCGGCCTGCTGATGAAGATTATGCAGAAGAAGCTGTAGATGCTCTCCGGCATGGGAAAGTTATAGCTTTGCCCACGGATACCCTTTAT GGCTTTGCTTGTGATGCTTGTTCATCTGAAGCAGTAAACAGGATTTATGAGATCAAAGGCCGTAAGCAAACAAGTCCTCTAGCAATCTGTGTTGGGGATG TATTAGACATAGAGCGGTTTGCTGTCATTGACCACCTCCCTTCTGGCTTACTGGATTCTCTACTTCCTGGACCAGTCACTCTGATATTAAGTCGAGGAAC CTCAAGTGTGCTTGAGAAGTCTCTAAACCCAGGATTGGACAGTATTGGTGTCCGGGTGCCTGACTATAACTTCATCAGGGCAGTTGCTCGAGGTTTGGGA AGAGCGATAGCGCTCACCAGTGCTAATTTCAGTGGGCAGCCAAGTAGTACTTGCATCAAGGATTTTCAGAACCTGTGCCAGCATTGTGCATATGTGTATG ATGGTGGTGTCCTTCCATCTGGACGGGCAGGATCGACAATCGTAGATCTTCGCAAGGATGGAAAGTACAGGATTGTTAGACCTGGAAGTGCAAAGGAAGA GACGGTTGGAATCCTGGAAAAGCATTGGCTTGTGGAGGATGCAGGAAGCTAG
AA sequence Show only first row Show all	>Lus10037409 pacid=23152462 polypeptide=Lus10037409 locus=Lus10037409.g ID=Lus10037409.BGIv1.0 annot-version=v1.0 MNIQAARISSTLPLLVSRSRSSHTALGIRSTAFFPNPIHGKGVVSCSTKMMALECCNLEAFQREDQFGGVVRPADEDYAEEAVDALRHGKVIALPTDTLY GFACDACSSEAVNRIYEIKGRKQTSPLAICVGDVLDIERFAVIDHLPSGLLDSLLPGPVTLILSRGTSSVLEKSLNPGLDSIGVRVPDYNFIRAVARGLG RAIALTSANFSGQPSSTCIKDFQNLCQHCAYVYDGGVLPSGRAGSTIVDLRKDGKYRIVRPGSAKEETVGILEKHWLVEDAGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10037409 [exp]	0	1
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	6.2	0.7159
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10023938 [exp]	8.8	0.7027
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	17.5	0.6876
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	20.9	0.6793
					Lus10021453 [exp]	22.4	0.6762
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	26.8	0.6659
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	29.1	0.6595
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	30.2	0.6387
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10040602 [exp]	31.3	0.6638
					Lus10015310 [exp]	37.3	0.6556

Compare expression of checked genes

Lus10037409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.