Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60580 451 / 8e-155 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 344 / 5e-113 RING/U-box superfamily protein (.1) AT5G03180 279 / 5e-88 RING/U-box superfamily protein (.1.2) AT3G06330 202 / 3e-59 RING/U-box superfamily protein (.1.2.3) AT5G18760 173 / 1e-48 RING/U-box superfamily protein (.1) AT2G37950 63 / 5e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 60 / 6e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 59 / 9e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G05830 59 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G63780 55 / 5e-08 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041301 [exp] 825 / 0 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10022585 [exp] 514 / 9e-180 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 511 / 1e-178 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10026501 [exp] 350 / 1e-114 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1) Lus10019931 [exp] 301 / 1e-95 AT3G09760 360 / 2e-119 RING/U-box superfamily protein (.1) Lus10012791 [exp] 203 / 2e-59 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 204 / 6e-57 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 190 / 1e-54 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10037906 [exp] 143 / 3e-37 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013300 [exp] 493 / 6e-171 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 380 / 5e-127 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.016G022900 [exp] 342 / 5e-112 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 330 / 2e-107 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.010G014950 [exp] 212 / 7e-63 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 211 / 1e-62 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 209 / 9e-62 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.010G195100 [exp] 64 / 1e-11 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 61 / 4e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 60 / 4e-10 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10037410 pacid=23152465 polypeptide=Lus10037410 locus=Lus10037410.g ID=Lus10037410.BGIv1.0 annot-version=v1.0 ATGGAGGAAAAGTTTTTGACTCAGATGCAAGATGATGATGGTGTGGGTTCTAGCCAATCCCTTCCTTCTTCTATTGTCCACCACCAGGAGGAAGCCTCAA CTGGAATAGTGGAGGAAGAAAGCAGCCAGGCAAACCATTGGAAGAAGAAAAATCTGTTTCTAGAGATACCTTCAAGAATTATGGAGGAGCAAGCATCTCC TCCACAAGACAGTGTTGTCATTACGATGCCACCGATAACACCTACTCAAACTCCCAGGAAGGTCAATTTCCAATTGACACCTACTTCTTCTGATTCAAGA GGAGGAGCCAATCGGTCTCCCGCACCTACTCCATCAAAAGGGAAGTCTTCTCTGAAGAATCTGTTGCCTAAATTAAGCTTTAAGTCTCGAATTGCTACGC TGAATGCTGCTGCTGAGAAGGCTTGCTATCCGGAAGCTCCAACTACTCATCATCATCAAGACAAGCCTTCTATCCCAAGGTCATTGTCTCTTACAAAGCT CTTCACTCCTAGGATGAAAAGGACTTCATCACTTCCTGTCACGCCGATTGCACATTTGTCTACCCCGGACTCTACACATGGTGGAAGTATCAGTGGCCCT CTCATTCCAACGAGAGATGGTCTTCCACGCAAGATTGCTCGCTCGCTGTCTGTTCCTGTTAACAACAAAGATGGAAGCATACGGAGAATGGATTCGTTCT TTCGAGTGATTCCTTCAACTCCTAGATCAAAATTAGAAGCAGATATAACAGCAGTGGATGCATCTTCCCCAAGTGTCACTGCCGAAACCATTGACGATGA CGGTGAAGACATACCTGAAGAAGAGGCTGTTTGCAGAATTTGTCTAGTTGAACTTTGTGAAGGAGGGGAGACCCTTAAGATGGAATGCAGTTGCAAAGGT GAACTTGCTCTGGCACATCAAGAATGTGCAGTCAAGTGGTTTAGCATCAAAGGGAACAAAACTTGTGATGTTTGCAAGCATGATGTTGAAAACTTACCTG TTACTCTGTTACGGATACAAAGTAGGCGTACTGGTATTGCTGGATTAGCGAGAGGTCAAGTAGCCGATCCCGATGGATACAGGGTTTGGCAAGAAGTTCC AGTGCTGGTAATCGTTAGCATGCTTGCCTACTTCTGTTTCCTGGAGCAGCTTCTGGTGGAGCATATGCAAACTGGTGCAATTGCTCTATCCCTTCCATTT TCTTGTGTGCTCGGTCTCCTTTCGTCCATGATCTCGTCAACTATGGTGAAGAGACGATTCGTTTGGGTGTATGCATCAACGCAGTTTGCTTTAGTGGTCC TGTTTGCTCACATTTTCTACTCATTGGTTGGAGTGCAAGCAGTTCTGTCGATCTTGCTGGCAATATTTGCTGGTTACGGGGTGGCAATGAGTGGAAGTTC GATCATCATCGAGTTTGTGAGGTGGAGACGAAGATGGCGGAATAGAAGAAGATCGGAACAACAGCAGCTTGGGAGCCATGTGGTGATGGGAGGTGGAATT CCGGGACCTCTGACTTCATCTGCAGTAAGCACAGCTGGTTCTGGTGGTAGTACAAGGGAAGGAAGTGCACGTACAAATGATGTAGAAAATCTATAA
AA sequence Show only first row Show all	>Lus10037410 pacid=23152465 polypeptide=Lus10037410 locus=Lus10037410.g ID=Lus10037410.BGIv1.0 annot-version=v1.0 MEEKFLTQMQDDDGVGSSQSLPSSIVHHQEEASTGIVEEESSQANHWKKKNLFLEIPSRIMEEQASPPQDSVVITMPPITPTQTPRKVNFQLTPTSSDSR GGANRSPAPTPSKGKSSLKNLLPKLSFKSRIATLNAAAEKACYPEAPTTHHHQDKPSIPRSLSLTKLFTPRMKRTSSLPVTPIAHLSTPDSTHGGSISGP LIPTRDGLPRKIARSLSVPVNNKDGSIRRMDSFFRVIPSTPRSKLEADITAVDASSPSVTAETIDDDGEDIPEEEAVCRICLVELCEGGETLKMECSCKG ELALAHQECAVKWFSIKGNKTCDVCKHDVENLPVTLLRIQSRRTGIAGLARGQVADPDGYRVWQEVPVLVIVSMLAYFCFLEQLLVEHMQTGAIALSLPF SCVLGLLSSMISSTMVKRRFVWVYASTQFALVVLFAHIFYSLVGVQAVLSILLAIFAGYGVAMSGSSIIIEFVRWRRRWRNRRRSEQQQLGSHVVMGGGI PGPLTSSAVSTAGSGGSTREGSARTNDVENL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60580			RING/U-box superfamily protein...		Lus10037410 [exp]	0	1
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	3.9	0.8329
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	4.9	0.8391
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	5.7	0.8027
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	5.7	0.8336
AT1G50170		ATSIRB	sirohydrochlorin ferrochelatas...		Lus10008769 [exp]	5.9	0.8138
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	6.0	0.8196
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	7.9	0.8554
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Lus10027436 [exp]	8.3	0.8366
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10028802 [exp]	10.2	0.7655
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	12.4	0.7997

Compare expression of checked genes

Lus10037410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.