Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28450 875 / 0 C3HZnF zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) AT3G21300 90 / 3e-18 RNA methyltransferase family protein (.1) AT5G06770 44 / 0.0003 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041301 [exp] 1558 / 0 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10039973 [exp] 91 / 6e-22 ND / Lus10003766 [exp] 82 / 4e-18 ND 36 / 0.004 Lus10000172 [exp] 85 / 8e-18 AT3G21300 420 / 3e-146 RNA methyltransferase family protein (.1) Lus10009743 [exp] 87 / 3e-17 AT3G21300 806 / 0.0 RNA methyltransferase family protein (.1) Lus10032975 [exp] 47 / 7e-06 ND 40 / 1e-04 Lus10000555 [exp] 44 / 0.0004 AT3G04500 329 / 8e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014659 [exp] 43 / 0.001 AT3G04500 315 / 7e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039338 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G013000 [exp] 1056 / 0 AT2G28450 870 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Potri.001G195300 [exp] 98 / 6e-21 AT3G21300 817 / 0.0 RNA methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05958 [flax] [poplar] tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10037411 pacid=23152377 polypeptide=Lus10037411 locus=Lus10037411.g ID=Lus10037411.BGIv1.0 annot-version=v1.0 ATGGCGTCGCCGCAATCTTCAATCGACCAACTCCCTTCCTCTTCTCCGCCTCATACCGCCGACGGAACCTCCCCTCCTGTTCCTGCAACCGTTGATCCTC CTCAGCCAGCAGCACCCGACTCCACCGGCGCGGCCAAGCGCAAGAGGGACGAAGAAGTCCTTGAACCCGAAGCCAAACCGGATCCATCATTCCATCCCTA TTATAAAACCTCACTGTGTTCCTACTTTAGGCGGGATTCGGGCTCCTGTAGCCATGGCGCTACTTGCCGATACGCTCACAGCGAGGAGGAGCTCCGTCCA CGCCCTGATAATTCTTGGGATCCTACCTCCGAGCGCGCCAAGAAGTCGTTGAAGTTGGATAACGAATTAGCCGGCGATGATGCGGAGGAGAAGAAAGAGG AGAAGGTGGATGGCATCATGATGACTGATATGATTGCTGATGAAGGCGATGCCAATGGTGGTTGTCTGGACTTTGACCTCAGTAAATGCCTTGTGCATTT ACCCAGGAACTGGAGCACCGATCAATTGAGCAAGTTCCTTACTGAGCATGGAATTTCATTCAAGTCTGCTAAGAAGAAGAAAGGCATGACTGTGGGATTT GTTAGCTTTCAGAATGTGGAGCATTTGACAGCAGCTCTGCCGGAACTAGAGGGGAAATCTGTTGGCAACAAGAAAATTAAAGTAGCCGATGTTGATCCTC GCTCGTATGACAAGAAAATTAGGTCGGCTATGGATTCGGCAGCAGAGCGAGAGAATGGTGTTGTATCTAAATCTTCAGATGGTGATGTAAATGATGAAAG TTTGGCTGTAGAGGGTTCCGACTCTAAAGAAAAATGTGCTCGTGATGTTGTGACTCCACTGGCTCACATGTCATATGAAAAACAGTTGGTGCATAAGATG ACCTCTCTCGGGCAGATGCTGAAAAAGCTTACTAGGCATGGACGGAAAGCTTGTCCCAGTGGGGTTTCTCTACCGGAATGGATTTTGCAAGCAAGGGAGA TAGGTGGTCTCCCATGCAAACTTGAGGGTATACTTGAGTCGCCGCTTGTGAACGGATATCGGAATAAGTGTGAGTTTTCAGTGGGATATTCTCTTGGAGG AAAGCCTACTGTAGGGTTTATGCTAGGAAACTTCAGGGAGGGTGTTACTGCAGTAGAAGAACCAGTGGATTGCCCAAATGTTTCTAGTATATCTTTGAAG TATGCCTTGATCTTTCAAGAGTTCTTGCAACAGTCGAGTTTGCCTTTATGGAACAGATTTATGAATACTGGTTTTTGGCGTCAGCTCACGGTCCGAGAAG GTAGATTACCTGGAAAGGCAGCTGATGTAGAACATGCAGAGGCAAACATATCCGAGGTTATGATTATGGTTCAGGTTTCTACGAAGGGTTTTGATGAAGC ACTAATAAGCAATGAACTTCAGAGAATGGCACAGTCATTTACAAACGGAGCTGTCACAAACTCTCCTCCTTTGCCTCTAACAGCTTTGGTTCTTCAGGAT CATCAAGGAATATCAAATGTTGCGCCAGCTGATGCTCCACTACGTACAGTGGACATTGCTACTGCAGAAACTGGATCTGTAGTCAAAGAGGCTGATGGTA CCGCAGAACCCAGAATTCATGATCATATTAGCAACTTACGGTTCTCTATATCACCAACAGCATTTTTTCAGGTCAACACCCTTGCTGCTGAGAAACTATA TGCACTTGCTGGCGATTGGGCTGATTTGGGTCCTGATACTCTGTTGTTTGATGTATGCTGTGGGACTGGAACAATTGGGCTCACTTTGGCGCACCGTGTT GGTATGGTTGTTGGGATTGAGATGAATGCTTCTGCAGTTTCAGATGCCAATCGAAATGCTGAAATCAATGGCATAAAAAACTGTAGATTTGTGTCTGGGA AGGCAGAGCATGTTATTGGTTCCCTGTTGCAAGAGTACCTGAAAATGTCTGACTTACCAAGTTCTTCCGGAACAACCGACAAAGAGGTCAATACTTTTGA ACAAAAGGAGTTATCCAATGGGGATGAAATAGGTGCTGACAAGAATTCAAGCGGTGAGCTTGATCGCAATGAAGCTGCTAAGGGTTCAGAAAATGGTGAA CAACTGGAAAACAAATTGGATAACACTTGTTCCTCAGGAGACGCGATCTCTTCAGCTCCGAAATTCAAAAACATTGTCGCCATTGTCGATCCTCCACGGA ATGGGCTCCATCCAATAGTTATCAAAGCTCTTCGAACTCACTCAGGCCTGCGTCGTCTTGTTTACATTTCGTGCAATCCTGAAACATTAGTGGCGAATGC AATCGAGCTATGCACGCCATCTCCTGCCGAAACAACAGAGAAAGGGAATAAAAACAACCGTGGATGGAGAAACATGAGCAACGCTGGATTGGCACGCCAC AGAGCTAAATCCATGCCCACTTCGGAACCATTTCATCCCGTAAAAGCAATGGCTGTTGATCTCTTCCCGCACACTCCACATTGTGAAATGGTAATGCTTC TCGAGAGCTCGTCAGTGGTTCTCAAGCCTCCTTGCAACGTCTTGGTCCAGAACTGCAACCTCCAGTTCAAATCGGGAACAATCGGACTCCCATGTGAAGA ACCCGCAATCAGAAGTCCTCCAGAATGGGCATCGGAAGAAGGTCTTGCCGTGATTCTTTGCAGTAGTCGCCGTCTTCAGAACAACTCCACGTTGCGGGAA CACGTAATTGAACTCGATCCATCAAGGTGGTCACTGATTTCCGATCACTAG
AA sequence Show only first row Show all	>Lus10037411 pacid=23152377 polypeptide=Lus10037411 locus=Lus10037411.g ID=Lus10037411.BGIv1.0 annot-version=v1.0 MASPQSSIDQLPSSSPPHTADGTSPPVPATVDPPQPAAPDSTGAAKRKRDEEVLEPEAKPDPSFHPYYKTSLCSYFRRDSGSCSHGATCRYAHSEEELRP RPDNSWDPTSERAKKSLKLDNELAGDDAEEKKEEKVDGIMMTDMIADEGDANGGCLDFDLSKCLVHLPRNWSTDQLSKFLTEHGISFKSAKKKKGMTVGF VSFQNVEHLTAALPELEGKSVGNKKIKVADVDPRSYDKKIRSAMDSAAERENGVVSKSSDGDVNDESLAVEGSDSKEKCARDVVTPLAHMSYEKQLVHKM TSLGQMLKKLTRHGRKACPSGVSLPEWILQAREIGGLPCKLEGILESPLVNGYRNKCEFSVGYSLGGKPTVGFMLGNFREGVTAVEEPVDCPNVSSISLK YALIFQEFLQQSSLPLWNRFMNTGFWRQLTVREGRLPGKAADVEHAEANISEVMIMVQVSTKGFDEALISNELQRMAQSFTNGAVTNSPPLPLTALVLQD HQGISNVAPADAPLRTVDIATAETGSVVKEADGTAEPRIHDHISNLRFSISPTAFFQVNTLAAEKLYALAGDWADLGPDTLLFDVCCGTGTIGLTLAHRV GMVVGIEMNASAVSDANRNAEINGIKNCRFVSGKAEHVIGSLLQEYLKMSDLPSSSGTTDKEVNTFEQKELSNGDEIGADKNSSGELDRNEAAKGSENGE QLENKLDNTCSSGDAISSAPKFKNIVAIVDPPRNGLHPIVIKALRTHSGLRRLVYISCNPETLVANAIELCTPSPAETTEKGNKNNRGWRNMSNAGLARH RAKSMPTSEPFHPVKAMAVDLFPHTPHCEMVMLLESSSVVLKPPCNVLVQNCNLQFKSGTIGLPCEEPAIRSPPEWASEEGLAVILCSSRRLQNNSTLRE HVIELDPSRWSLISDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10037411 [exp]	0	1
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10009490 [exp]	8.9	0.8837
AT2G47300			ribonuclease Ps (.2.3)		Lus10001156 [exp]	11.5	0.8530
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	12.1	0.8806
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	14.6	0.8753
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10035589 [exp]	17.1	0.8815
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	18.7	0.8588
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Lus10034771 [exp]	19.0	0.8234
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	19.3	0.8264
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	20.3	0.8076
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	20.6	0.8620

Compare expression of checked genes

Lus10037411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.