Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09770 338 / 5e-115 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) AT3G53410 306 / 2e-103 RING/U-box superfamily protein (.1) AT5G03200 289 / 2e-96 RING/U-box superfamily protein (.1) AT5G19080 257 / 3e-83 RING/U-box superfamily protein (.1) AT3G06140 236 / 3e-75 RING/U-box superfamily protein (.1) AT1G59560 51 / 6e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT3G23280 49 / 2e-06 XBAT35 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) AT4G24204 47 / 3e-06 RING/U-box superfamily protein (.1.2.3) AT4G03000 48 / 8e-06 RING/U-box superfamily protein (.1.2) AT2G38185 47 / 8e-06 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041300 [exp] 545 / 0 AT3G09770 352 / 3e-120 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10015080 [exp] 331 / 4e-112 AT3G09770 364 / 9e-125 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10023182 [exp] 326 / 2e-111 AT3G09770 364 / 5e-126 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Lus10004419 [exp] 262 / 5e-85 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 256 / 1e-82 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1) Lus10010392 [exp] 48 / 2e-06 AT4G24204 86 / 7e-22 RING/U-box superfamily protein (.1.2.3) Lus10004813 [exp] 48 / 6e-06 AT2G38185 309 / 2e-100 RING/U-box superfamily protein (.1.2.3.4) Lus10041246 [exp] 48 / 9e-06 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10027994 [exp] 46 / 2e-05 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G128700 [exp] 356 / 2e-122 AT3G09770 380 / 4e-131 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.016G089000 [exp] 276 / 6e-91 AT3G09770 301 / 1e-100 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2) Potri.013G025400 [exp] 258 / 4e-83 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 256 / 1e-82 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 254 / 8e-82 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 251 / 4e-80 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.006G100400 [exp] 49 / 3e-06 AT2G38185 341 / 2e-113 RING/U-box superfamily protein (.1.2.3.4) Potri.001G168700 [exp] 48 / 5e-06 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.016G116300 [exp] 48 / 5e-06 AT5G01450 348 / 3e-116 RING/U-box superfamily protein (.1) Potri.003G065500 [exp] 47 / 8e-06 AT1G54150 341 / 3e-115 E3 Ubiquitin ligase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037412 pacid=23152247 polypeptide=Lus10037412 locus=Lus10037412.g ID=Lus10037412.BGIv1.0 annot-version=v1.0 ATGGGAAACACAGGAAGCGCCGGCCGGAGGCACCATCCGGCACACCATCACCACAATCGTCGCCACCATCCTCGTCCGCCGTCTCCCGTAGGACAGACTC GGGTCACCACAAGCCAATACGCCTTCGCCGCACCGTCGCAGTACCCCAACCCTAATTTGCCAACTCCCTACTACCACCACCATCCTGGGGGATCATATTA CCATACCTCTCGCCTTGCAGCTCCCCAGAATTACCCGCCCTACCCTTACGCTGCTCCTCCTCCTCCACAGCCGCCCGCTGTACCCTACGTCGACCACCAG AAGGCTGTCACGATTAAGAACGACGTCAATGTGAAGAAGGAGACGATTAGGATCGTTGAAGATGACGAAAATCCAGGATGTTTCCTTGTTTCTTTCACCT TCGATGCTACCGCTCCCGGAAGCATCACCGTCTTGTTTTTCGCGAAAGAGAGCGAGGACTGCAGCCTCGTAGCAACGAGAGAAGATGTGTTTAAGCCTGT AACCATGTCTTTCGAGCAAGGTCTTGGTCAGAAGTTTAAACAACCTTCTGGAACCGGGATTGATTTCTCAATGTTTGAGGAGGCACAGTGCAAGAATGCA AGTGATGAAGGGGTGTATCCTCTAGTGCTGAAGGCTGAGTCACGCCCGTCGGCCACTGAGGGATCAGAATGTAACAAGAACGGCAATTCCCAGATGACCT TGGCAATCTTTGATCGGAAGGAAAAAGGTGATTATGACGTAAGAGTGATGAAACAAATCCTGTGGGTGAATAATACTAGGTATGAGCTGCAGGAGATCTA TGGGATCGGGAATTCCGTGGATGTGGAATCTGAGGAAGGTGACCAAGGAAAAGAGTGTGTAATTTGCTTGTCAGAACCTCGAGACACTACTGTTCTACCT TGCCGTCACATGTGCTTGTGCAGTGGATGCGCCAAGGTGTTGCAATTTCAAACGAACCGGTGCCCTATTTGCAGGCAACCGGTAGAGCGCCTCCTGGAGA TCAAAGTGAATGAAGTAGCAGAGAATTAA
AA sequence Show only first row Show all	>Lus10037412 pacid=23152247 polypeptide=Lus10037412 locus=Lus10037412.g ID=Lus10037412.BGIv1.0 annot-version=v1.0 MGNTGSAGRRHHPAHHHHNRRHHPRPPSPVGQTRVTTSQYAFAAPSQYPNPNLPTPYYHHHPGGSYYHTSRLAAPQNYPPYPYAAPPPPQPPAVPYVDHQ KAVTIKNDVNVKKETIRIVEDDENPGCFLVSFTFDATAPGSITVLFFAKESEDCSLVATREDVFKPVTMSFEQGLGQKFKQPSGTGIDFSMFEEAQCKNA SDEGVYPLVLKAESRPSATEGSECNKNGNSQMTLAIFDRKEKGDYDVRVMKQILWVNNTRYELQEIYGIGNSVDVESEEGDQGKECVICLSEPRDTTVLP CRHMCLCSGCAKVLQFQTNRCPICRQPVERLLEIKVNEVAEN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10037412 [exp]	0	1
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10027449 [exp]	1.0	0.9165
AT5G35732			unknown protein		Lus10006404 [exp]	2.8	0.8911
AT5G23230		NIC2	nicotinamidase 2 (.1)		Lus10040988 [exp]	4.5	0.8766
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	4.9	0.8853
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	5.5	0.8759
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	5.7	0.8676
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	7.5	0.8800
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	7.9	0.8705
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10000375 [exp]	9.8	0.8482
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10033754 [exp]	12.0	0.8718

Compare expression of checked genes

Lus10037412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.