Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60570 558 / 0 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 347 / 3e-117 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 343 / 4e-115 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 336 / 8e-113 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 328 / 2e-109 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 230 / 1e-71 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 199 / 7e-60 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 94 / 4e-21 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 94 / 4e-21 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 82 / 4e-17 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041299 [exp] 721 / 0 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10030489 [exp] 353 / 2e-119 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10012841 [exp] 353 / 2e-119 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 332 / 3e-111 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 328 / 1e-110 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 296 / 3e-98 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 101 / 4e-24 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10002112 [exp] 98 / 2e-22 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10013899 [exp] 97 / 7e-22 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077800 [exp] 452 / 3e-158 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 450 / 2e-157 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G063200 [exp] 355 / 5e-120 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G331500 [exp] 246 / 1e-77 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 242 / 2e-76 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 103 / 2e-24 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 101 / 2e-23 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G004500 [exp] 93 / 9e-21 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 90 / 1e-19 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 89 / 1e-19 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10037413 pacid=23152535 polypeptide=Lus10037413 locus=Lus10037413.g ID=Lus10037413.BGIv1.0 annot-version=v1.0 ATGGAGGGGGGACAAAGGGTAGTCAGTCATCAAACAATAAGAAGTAGGGAAGGAGTGAGTGATGGTCGTTCGAGACTTGGATCAAGTGATTCACTCCTTC CTGGGCTTGTCGACGACGTTGCATTGAATTGTCTCGCGTGGACCTGTAGATTAGACCATTCCTCTTTGTCCTGTATAAACAAGAGGTTTAATAAGTTAAT CAAAAGTGGGTATTTATATGGGTTGAGGAAGCAATTGGGAATCATAGAGCATTGGGTATACTTGGTTTGTGATCCAAGGGGGTGGGAGGCATTTGATCCA ACGAGGAAAAAATGGATGGCGCTGCCAAGGATACCCTGTGATGAATGTTTCAATCATGCTGACAAAGAGTCTTTGGCTGTGAGCGATGAATTATTGGTGT TTGGGCGTGAGTTGTTTGATTTTGCGATTTGGAAGTATAGTTTGGTTAGTCGCAGCTGGGTTAAGTGTGATGGAATGAATCGTCCCCGTTGTTTGTTTGG GTCAGGCAGCTTTGGTTCAATTGCTATTGTTGCAGGAGGCAGCGATAAGAATGGAAAGATCTTGCAATCAGCAGAGCTATATGACTCCTCGACAGGGAGA TGGGAAATGCTCCCGAACATGCATTCACCACGTCGACTGTGCTCGGGATTTTTCATGGATGGAAAATTCTATGTGATCGGTGGTATGTCGAGTCCCACCA CATCCTTGACTTGTGGGGAGGAGTACGACCTGGAGAAAAGGAAATGGAGGAAGATAGAGGGAATGTATCCTAATGTCAATAAAGCCGCTCAGGCTCCTCC TCTTGTTGCAGTGGTAGATAACCAGTTATATGCAGTGGAGTATCTAACTAACATGGTGATGAAATACGACAAGCAGAAAAACACTTGGAATGTGTTGGGG AGGCTTCCTGTGAGGGCAGATTCTTCAAACGGTTGGGGTTTGGCTTTCAAGGCTTGCGGGGAGCAACTGCTGGTTGTGGGTGGGCAAAGAGGACCTGAAG GTGAAGGAATTGTTCTGAATACATGGTGTCCGAAATCAGGAGTGAATAATGGTACCTTGGATTGGGAGGTTATTGGTGTGAAGGAGAATGCTGGGGTGTT CGTCTACAACTGTGCCGTAGCTGGATGTTGA
AA sequence Show only first row Show all	>Lus10037413 pacid=23152535 polypeptide=Lus10037413 locus=Lus10037413.g ID=Lus10037413.BGIv1.0 annot-version=v1.0 MEGGQRVVSHQTIRSREGVSDGRSRLGSSDSLLPGLVDDVALNCLAWTCRLDHSSLSCINKRFNKLIKSGYLYGLRKQLGIIEHWVYLVCDPRGWEAFDP TRKKWMALPRIPCDECFNHADKESLAVSDELLVFGRELFDFAIWKYSLVSRSWVKCDGMNRPRCLFGSGSFGSIAIVAGGSDKNGKILQSAELYDSSTGR WEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPTTSLTCGEEYDLEKRKWRKIEGMYPNVNKAAQAPPLVAVVDNQLYAVEYLTNMVMKYDKQKNTWNVLG RLPVRADSSNGWGLAFKACGEQLLVVGGQRGPEGEGIVLNTWCPKSGVNNGTLDWEVIGVKENAGVFVYNCAVAGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	0	1
AT5G58375			Methyltransferase-related prot...		Lus10008585 [exp]	1.4	0.9325
AT5G13810			Glutaredoxin family protein (....		Lus10039537 [exp]	2.0	0.9289
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Lus10023705 [exp]	4.2	0.8864
AT2G46620			P-loop containing nucleoside t...		Lus10030220 [exp]	4.5	0.8951
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	5.2	0.8717
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	6.9	0.8921
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10014985 [exp]	8.7	0.8655
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	11.0	0.8863
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029231 [exp]	12.0	0.8705
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	12.1	0.8740

Compare expression of checked genes

Lus10037413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.