Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09310 186 / 8e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041297 [exp] 233 / 3e-80 AT5G09310 190 / 3e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063100 [exp] 210 / 2e-71 AT5G09310 189 / 7e-63 unknown protein Potri.007G106200 [exp] 107 / 3e-31 AT5G09310 104 / 2e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10251 [flax] [poplar] PEN-2 Presenilin enhancer-2 subunit of gamma secretase
Representative CDS sequence Show only first row Show all	>Lus10037415 pacid=23152593 polypeptide=Lus10037415 locus=Lus10037415.g ID=Lus10037415.BGIv1.0 annot-version=v1.0 ATGGAACCCTCACACCCTAACTCCTCTATATCTTCTTCTTCCACCACAAATCCCACACCGATCCCCGACTCCATACTCGCGTCGGCGCCTGTGTGGCCCA CCATCGACGGTCCACTAGGTCTGACGGAGGATGAATCGTTGACCTACGCCCGTCGCTTCTACGGCTTCGGCTACGCCCTCCTTCCGTGGCTGTGGGCAGT GAATTGCTTCTACTTCTGGCCCGTCCTCCGCCATTCCCGCTCTTTCCCCCTCATTCGCCCCTATGTTATGAAATCGGCTATTGGATTTTGGGTATTCACT AGTGTCCTCTGTTCGTGGGCATTCACATTCGCGATCGGCGGGGAAGAGCTGTTCGGCCCTGTCTGGGATAAACTAGTGATGTACAATCTTGCTGATAGGC TAGGGTTGACAGGTTGGATCTAG
AA sequence Show only first row Show all	>Lus10037415 pacid=23152593 polypeptide=Lus10037415 locus=Lus10037415.g ID=Lus10037415.BGIv1.0 annot-version=v1.0 MEPSHPNSSISSSSTTNPTPIPDSILASAPVWPTIDGPLGLTEDESLTYARRFYGFGYALLPWLWAVNCFYFWPVLRHSRSFPLIRPYVMKSAIGFWVFT SVLCSWAFTFAIGGEELFGPVWDKLVMYNLADRLGLTGWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09310			unknown protein		Lus10037415 [exp]	0	1
AT5G19910		MED31	SOH1 family protein (.1.2)		Lus10016131 [exp]	2.0	0.9241
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	3.5	0.9273
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	4.2	0.9187
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	5.9	0.9110
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	6.0	0.9065
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	7.5	0.8863
AT5G27710			unknown protein		Lus10031519 [exp]	8.2	0.8738
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	11.2	0.8949
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	12.6	0.9114
AT1G68760		ATNUDX1, ATNUDT...	NUDIX HYDROLASE 1, ARABIDOPSIS...		Lus10033325 [exp]	12.6	0.8911

Compare expression of checked genes

Lus10037415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.