Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27020 451 / 3e-163 PAG1 20S proteasome alpha subunit G1 (.1) AT3G14290 125 / 3e-35 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 125 / 3e-35 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G22110 122 / 6e-34 PAC1 20S proteasome alpha subunit C1 (.1) AT1G16470 119 / 6e-33 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 119 / 9e-33 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT1G47250 119 / 3e-32 PAF2 20S proteasome alpha subunit F2 (.1) AT5G42790 119 / 4e-32 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT5G35590 111 / 1e-29 PAA1 proteasome alpha subunit A1 (.1) AT2G05840 107 / 2e-28 PAA2 20S proteasome subunit PAA2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041296 [exp] 456 / 6e-165 AT2G27020 430 / 4e-155 20S proteasome alpha subunit G1 (.1) Lus10037454 [exp] 125 / 7e-33 AT1G53850 464 / 8e-163 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10003936 [exp] 125 / 1e-32 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10017135 [exp] 117 / 9e-32 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10024269 [exp] 117 / 1e-31 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10042145 [exp] 116 / 2e-31 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10007396 [exp] 116 / 3e-31 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10004235 [exp] 113 / 7e-31 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10036210 [exp] 114 / 1e-30 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G224100 [exp] 464 / 3e-168 AT2G27020 457 / 3e-165 20S proteasome alpha subunit G1 (.1) Potri.009G020800 [exp] 464 / 4e-168 AT2G27020 453 / 5e-164 20S proteasome alpha subunit G1 (.1) Potri.001G162900 [exp] 123 / 2e-34 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.016G015400 [exp] 121 / 2e-33 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.003G072500 [exp] 120 / 3e-33 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.006G008800 [exp] 120 / 7e-33 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 118 / 3e-32 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 118 / 3e-32 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.002G033900 [exp] 117 / 2e-31 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Potri.005G229200 [exp] 117 / 2e-31 AT5G42790 455 / 9e-164 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature
Representative CDS sequence Show only first row Show all	>Lus10037416 pacid=23152472 polypeptide=Lus10037416 locus=Lus10037416.g ID=Lus10037416.BGIv1.0 annot-version=v1.0 ATGAGCAGCATCGGCACTGGTTACGATCTTTCCGTCACCACTTTCTCCCCCGATGGACGCGTATTCCAGATTGAGTACGCCGCTAAGGCCGTCGACAACA GCGGGACTGTTGTGGGGATCAAGTGCAAAGATGGAATTGTCATGGGTGTGGAGAAGCTCATAGCTTCCAAGATGATGCTTCCCGGTTCCAATAGGAGGAT ACATGCAGTTCATAAGCACTCTGGGATGGCTGTGGCTGGCTTAGCTGCTGACGGTCGACAAATCGTCGCACGAGCAAAGTCTGAGGCCGCTAACTATGAC AATGTTTACGGTGAACCTATCCCTGTGAAAGAACTTGCAGATCGTGTTGCTAGCTATGTCCATTTGTGTACCCTCTATTGGTGGCTGAGACCCTTTGGTT GTGGTGTTATTCTTGGTGGTTATGACAGAGATGGACCACAGTTGTACATGATTGAACCATCTGGTATCTCCTATAGATACTTTGGTGCTGCAATAGGAAA GGGGAAGCAAGCAGCTAAAACTGAAATTGAGAAGTTAAAGCTATCGGAAATGACATGCCGTGAAGGAATTCTTGAAGTTGCCAAAATCATTTACAAGGTA CATGATGAGGCAAAGGATAAGGCCTTTGAATTGGAACTGAGCTGGGTTTGTGAAGAGTCAATGAGACAACATCAGAAGGTTCCTGAAGAACTATTGGAGG AGGCTAAGTCTGCTGCTAGGACCGCACTTGAAGAAATGGATGCTGATTAG
AA sequence Show only first row Show all	>Lus10037416 pacid=23152472 polypeptide=Lus10037416 locus=Lus10037416.g ID=Lus10037416.BGIv1.0 annot-version=v1.0 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHAVHKHSGMAVAGLAADGRQIVARAKSEAANYD NVYGEPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGILEVAKIIYKV HDEAKDKAFELELSWVCEESMRQHQKVPEELLEEAKSAARTALEEMDAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10037416 [exp]	0	1
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10015867 [exp]	1.4	0.9319
AT4G24820			26S proteasome, regulatory sub...		Lus10014916 [exp]	2.8	0.9212
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10023131 [exp]	3.5	0.8964
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10035470 [exp]	4.2	0.9156
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10029633 [exp]	6.0	0.8886
AT3G04830			Protein prenylyltransferase su...		Lus10001785 [exp]	6.3	0.9184
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10032420 [exp]	6.9	0.9189
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023492 [exp]	7.5	0.9086
AT2G30410		TFCA, KIS	TUBULIN FOLDING FACTOR A, tubu...		Lus10031896 [exp]	7.6	0.8795
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	8.7	0.8924

Compare expression of checked genes

Lus10037416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.