Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26990 765 / 0 COP12, ATCSN2, FUS12 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) AT1G29150 80 / 5e-16 RPN6, ATS9 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041295 [exp] 857 / 0 AT2G26990 798 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Lus10037125 [exp] 83 / 5e-17 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10036805 [exp] 78 / 3e-15 AT1G29150 718 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10008632 [exp] 78 / 3e-15 AT1G29150 721 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Lus10042184 [exp] 76 / 6e-15 AT1G29150 425 / 2e-148 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222700 [exp] 831 / 0 AT2G26990 772 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.009G020900 [exp] 829 / 0 AT2G26990 815 / 0.0 FUSCA 12, CONSTITUTIVE PHOTOMORPHOGENIC 12, proteasome family protein (.1) Potri.010G164200 [exp] 74 / 3e-14 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.008G042400 [exp] 73 / 7e-14 AT1G29150 611 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.013G020300 [exp] 71 / 4e-13 AT1G29150 634 / 0.0 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1) Potri.006G277900 [exp] 70 / 8e-13 AT1G29150 498 / 1e-175 REGULATORY PARTICLE NON-ATPASE 6, non-ATPase subunit 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10037417 pacid=23152383 polypeptide=Lus10037417 locus=Lus10037417.g ID=Lus10037417.BGIv1.0 annot-version=v1.0 ATGGAAGATTATGGGTTTGAGTACTCAGACGAGGAGCCCGAGGAACAAGATGTTGATATTGAGAATCAGTACTATAACTCCAAAGGTCTGGTGGAGACAG ACCCCGAAGATGCACTTTCTGGCTTTGCAGAAGTAGTTCGCATGGAACCAGAAAAGGCTGAGTGGGGTTTCAAAGCGCTAAAACAGACTGTGAAGATTTA TTATCGTTTGGGGAAGTACAAAGAGATGATGGATGCTTACAGGGAAATGCTTACATACATTAAATCAGCCGTGACTCGGAATTATAGTGAGAAATGCATA AACAATATCATGGATTTTGTTTCTGGATCAGCCAGCCAGAATTTCAGTCTCCTGCAAGAGTTTTACCAAACAACGTTGAAGGCCCTTGAAGAGGCAAAGA ATGAGAGACTGTGGTTCAAGACAAACCTTAAGCTTTGCAAAATCTGGTTTGATATGGGTGAATATGGTCGGATGAATAAGATTTTGAAGGAGCTCCATAA ATCTTGTCAAAAAGAAGATGGTTCAGATGACCAAAAGAAGGGTAGTCAGCTTCTGGAGGTTTATGCAATTGAGATCCAAATGTATACTGAAACAAAGAAC AACAAAAAGCTCAAGCAATTATACCAGAAGGCACTTGCAATCAAGTCAGCGATTCCACATCCAAGAATTATGGGAATAATTCGTGAGTGTGGTGGTAAGA TGCACATGGCAGAACGTCAGTGGGCTGAGGCAGCAACTGATTTTTTTGAAGCTTTCAAGAATTATGATGAAGCTGGGAACCAAAGGCGCATACAATGTCT AAAATACCTGGTTCTTGCCAATATGCTGATGGAGTCTGAAGTTAATCCATTTGATGGACAAGAGGCAAAACCATATAAGAACGACCCCGAGATTCTTGCA ATGACGAACCTTATCGCAGCATACCAGCGGAATGAAATTCTGGAGTTTGAAAAGATCCTTAAGAGTAACAGACGCACGATAATGGATGATCTATTCATTA GAAATTACATTGAAGATTTACTGAAGAATGTCAGAACTCAAGTGCTACTCAAGCTTATTAAACCTTACACTAGAATCCGCATACCTTTTATCTCAAAGGA ACTGAACGTGCCGGAGAAGGACGTGGAACAGTTACTGGTTTCACTGATACTGGACAACCGGATTGATGGGCATATCGACCAAGTCAACCGGCTGTTAGAA CGTGGAGATAGGTCGAAGGGAATGAAGAAGTACACTGCAATTGAGAAATGGAACACACAACTCAAATCTCTTTCTCAGACTGTTAGCTACCGTGTAGCGT GA
AA sequence Show only first row Show all	>Lus10037417 pacid=23152383 polypeptide=Lus10037417 locus=Lus10037417.g ID=Lus10037417.BGIv1.0 annot-version=v1.0 MEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEDALSGFAEVVRMEPEKAEWGFKALKQTVKIYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI NNIMDFVSGSASQNFSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMNKILKELHKSCQKEDGSDDQKKGSQLLEVYAIEIQMYTETKN NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILA MTNLIAAYQRNEILEFEKILKSNRRTIMDDLFIRNYIEDLLKNVRTQVLLKLIKPYTRIRIPFISKELNVPEKDVEQLLVSLILDNRIDGHIDQVNRLLE RGDRSKGMKKYTAIEKWNTQLKSLSQTVSYRVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	0	1
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	1.4	0.9300
AT1G03330			Small nuclear ribonucleoprotei...		Lus10042686 [exp]	1.7	0.9259
AT4G17010			unknown protein		Lus10001160 [exp]	2.0	0.9275
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	2.8	0.9255
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	3.7	0.9166
AT2G45520			unknown protein		Lus10015859 [exp]	4.0	0.9119
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	5.0	0.9189
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	5.5	0.9172
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	6.0	0.8772
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	6.5	0.8960

Compare expression of checked genes

Lus10037417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.