Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59970 124 / 1e-33 Matrixin family protein (.1) AT1G70170 122 / 1e-32 MMP matrix metalloproteinase (.1) AT4G16640 119 / 1e-31 Matrixin family protein (.1) AT2G45040 119 / 1e-31 Matrixin family protein (.1) AT1G24140 105 / 2e-26 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041294 [exp] 356 / 6e-125 AT1G59970 177 / 3e-53 Matrixin family protein (.1) Lus10037419 [exp] 243 / 2e-80 AT4G16640 157 / 2e-45 Matrixin family protein (.1) Lus10028955 [exp] 119 / 2e-31 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10004728 [exp] 116 / 2e-30 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10005605 [exp] 112 / 9e-30 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10041293 [exp] 109 / 3e-29 AT1G70170 94 / 1e-22 matrix metalloproteinase (.1) Lus10035221 [exp] 111 / 4e-29 AT1G24140 216 / 1e-67 Matrixin family protein (.1) Lus10039464 [exp] 108 / 4e-28 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10007478 [exp] 108 / 1e-27 AT4G16640 345 / 2e-117 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027600 [exp] 140 / 4e-40 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.008G027900 [exp] 129 / 4e-36 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.001G157500 [exp] 123 / 4e-33 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.019G073800 [exp] 120 / 2e-32 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.013G100400 [exp] 117 / 3e-31 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.019G073400 [exp] 113 / 8e-30 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.012G104600 [exp] 114 / 1e-29 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.014G058200 [exp] 112 / 3e-29 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.013G033200 [exp] 111 / 5e-29 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027500 [exp] 110 / 1e-28 AT1G59970 219 / 2e-69 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10037418 pacid=23152507 polypeptide=Lus10037418 locus=Lus10037418.g ID=Lus10037418.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCCGTCATAATCCTTGCCGCCGTTTCCCCTCTTCTTCATCTTCTTTGTGTAATTCAAGCTGTCCAGGTCGTTGACCGACTGCATGTTAAAA GATACCTTCAACGGTATGGTTACCTCAGTCAGGAAACAGAGGCTGAAGGTATAAGCAGTCGTATGCTCAAGTTTGGAATCAGACGGTATCAGCTCACCCA TGGCCTTCCGGTCGCCGGACGCGTCGACAACCACATGGATCTAACGGCGACTCCCAGATGCGGGGTCACCGATCTCGGTATTCGGTCAACTACGCACCAG AGCGGCAGCAACAGAACCCTCCAACCCGGGGAATCCAAGATGGAGGCATCACAACTTGTTGTACCGATTACTACTCGCCAGAACCGGTTGGAGGAGTTAG AGGAGGACATCCTCATCGGATGGTACTTAGGGGAGCACGGTGATTTGTTCCCATTCCAGGGGAGAGGCACAACGGTGGCCCACGCGTCTCCCCCAACAGC TGGGAAGCTGCATTTTGATGCCGACAAGACATGGACAGCAACAAAAAAGGTTGAGGTGCAGCTGTACGAAGTGGATCTGGAATCGGTGGCTGTTCATGAG ATAGGGCATCTGCTAGGGCTGAGACACTCAGATGTAAGAGATGCCATCATGTATCCATATACTGATTATGGCAATGTTAAGAGGGAGTTACATAGTGATG AGATTCAAGGTCTTTAA
AA sequence Show only first row Show all	>Lus10037418 pacid=23152507 polypeptide=Lus10037418 locus=Lus10037418.g ID=Lus10037418.BGIv1.0 annot-version=v1.0 MAAAVIILAAVSPLLHLLCVIQAVQVVDRLHVKRYLQRYGYLSQETEAEGISSRMLKFGIRRYQLTHGLPVAGRVDNHMDLTATPRCGVTDLGIRSTTHQ SGSNRTLQPGESKMEASQLVVPITTRQNRLEELEEDILIGWYLGEHGDLFPFQGRGTTVAHASPPTAGKLHFDADKTWTATKKVEVQLYEVDLESVAVHE IGHLLGLRHSDVRDAIMYPYTDYGNVKRELHSDEIQGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59970			Matrixin family protein (.1)		Lus10037418 [exp]	0	1
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10006159 [exp]	8.8	0.6589
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	9.9	0.7023
AT5G66780			unknown protein		Lus10026022 [exp]	12.0	0.7536
AT1G56290			CwfJ-like family protein (.1)		Lus10008172 [exp]	15.5	0.7294
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10002483 [exp]	18.4	0.7403
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10031389 [exp]	19.0	0.6984
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	27.7	0.6887
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	28.1	0.7286
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	31.9	0.7218
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	35.7	0.6855

Compare expression of checked genes

Lus10037418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.