Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59970 156 / 4e-45 Matrixin family protein (.1) AT4G16640 154 / 2e-44 Matrixin family protein (.1) AT1G70170 147 / 2e-41 MMP matrix metalloproteinase (.1) AT1G24140 143 / 9e-40 Matrixin family protein (.1) AT2G45040 139 / 1e-38 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041294 [exp] 390 / 4e-137 AT1G59970 177 / 3e-53 Matrixin family protein (.1) Lus10041293 [exp] 319 / 2e-110 AT1G70170 94 / 1e-22 matrix metalloproteinase (.1) Lus10037418 [exp] 239 / 6e-79 AT1G59970 124 / 1e-33 Matrixin family protein (.1) Lus10004728 [exp] 152 / 2e-43 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10032175 [exp] 145 / 1e-41 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 144 / 4e-41 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10028955 [exp] 145 / 1e-40 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 139 / 2e-38 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10005605 [exp] 137 / 2e-38 AT1G24140 223 / 9e-71 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G027600 [exp] 173 / 4e-52 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.008G027700 [exp] 167 / 1e-49 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.008G027900 [exp] 164 / 1e-48 AT1G59970 192 / 9e-59 Matrixin family protein (.1) Potri.008G027975 [exp] 164 / 2e-48 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.008G027500 [exp] 163 / 3e-48 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.001G157500 [exp] 150 / 1e-42 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.012G104600 [exp] 150 / 2e-42 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.015G103900 [exp] 147 / 3e-41 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.013G100400 [exp] 145 / 3e-41 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.019G073700 [exp] 137 / 2e-38 AT1G59970 213 / 7e-67 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10037419 pacid=23152580 polypeptide=Lus10037419 locus=Lus10037419.g ID=Lus10037419.BGIv1.0 annot-version=v1.0 ATGACGGCGGCCGTCGTTATGTCTTCTGCCATATTTCTTCTTCTTGTTGTTGTTCAAGCTGTCGAGGTGATGGACCGACTGCAAGTGAAGAAATACCTTC AACGATATGGTTACCTGAATCAGGAAACAGAGGCTGAATCTATAAGCAGTGGCATGCTCAAGTTCGGAATCAAAAAGTACCAGCTCACTTACGGCCTTCC GGCGACCGGACGCATCGATAACCACACCTTGAATCTTATGATGACTCCCCGATGTGGAGTCACCGATCTAGGTATTCGGTCAAGCCGGCGCCGGAGCTCC AGCAACGGAACGGGGCAATCCGCCTACAAATTCTTCGAAGGGAATCCGAAATGGGGTCGTGGCGAATTGTTCTACCGGTACGAAGTAAACGACGAGCTAC CTTCCCACATCAACTACGAAGCGGCGATATTCAGGGCAGTCCAGAGGTGGGAAGCGGTATGCCCTGCATTCAACTTCCGGCGAGTGCCAGACTACGACAT GCCGGTACCGGGAGTGTTGAATGCCATAGAGGAGAACTTCCACGTCGGGTGGTACTCGGGGGACCACGGGGACGGGCAGCCGTTCGGGGGGAGAGGAGCA CAGCTTGCGCACGCGTCTCCTCCCCCCTCGTACGCAGTGATGCATTTCAACGCGGACGAGATATGGAGGGCGACGGAAGGGTTTGACGTGCTGGATTTCG AAGCGGATGTCGAATCTGTGGCCGTTCACGAGATCGGGCATATGCTAGGGCTGGAACACACGGATGTTCAGGAAGCGATCATGTACCCTTACCTTGGTTA TGGAATAGTGAAGAGGGGGATACAGAACGATGACATTCAAGGTCTTGCTCATCTCTATTCCTTTTGCAATCTTGTGCAGAGGGATAAAGGTAGATGA
AA sequence Show only first row Show all	>Lus10037419 pacid=23152580 polypeptide=Lus10037419 locus=Lus10037419.g ID=Lus10037419.BGIv1.0 annot-version=v1.0 MTAAVVMSSAIFLLLVVVQAVEVMDRLQVKKYLQRYGYLNQETEAESISSGMLKFGIKKYQLTYGLPATGRIDNHTLNLMMTPRCGVTDLGIRSSRRRSS SNGTGQSAYKFFEGNPKWGRGELFYRYEVNDELPSHINYEAAIFRAVQRWEAVCPAFNFRRVPDYDMPVPGVLNAIEENFHVGWYSGDHGDGQPFGGRGA QLAHASPPPSYAVMHFNADEIWRATEGFDVLDFEADVESVAVHEIGHMLGLEHTDVQEAIMYPYLGYGIVKRGIQNDDIQGLAHLYSFCNLVQRDKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	0	1
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	3.2	0.9815
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	3.3	0.9421
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	4.5	0.9815
					Lus10012269 [exp]	5.5	0.9815
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	6.3	0.9815
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	7.1	0.9815
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	7.7	0.9815
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018890 [exp]	8.1	0.6676
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	8.4	0.9815
					Lus10035508 [exp]	8.9	0.9815

Compare expression of checked genes

Lus10037419 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.