Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26970 298 / 4e-103 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041292 [exp] 480 / 4e-175 AT2G26970 300 / 5e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222300 [exp] 296 / 5e-102 AT2G26970 301 / 9e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10037420 pacid=23152381 polypeptide=Lus10037420 locus=Lus10037420.g ID=Lus10037420.BGIv1.0 annot-version=v1.0 ATGGAGCGCCTCGCCAATGCGTTCTCGGTTCTGGACCTAGACGTCGAGGACGACCGACCACCCACCGCCCCTTCTTCCTCCACCTCAGGAAAGGGGAAGA AGGCAGTGAAGAATGACAAACCAATTCAGGAAGAAAGAGTAGCTTCTTCTGGGCCGTACACTATGCCCCTCGTGTGGATTGACCTCGAGATGACTGGTCT GGATGTTGAAGCCGATAGAATAATTGAGATTGCCTGTATAATTACTGATGGAAAGCTCACCAAATTAGTAGAGGGTCCCGAGTTGGTTATTCATCAAAGT GAAGAGTGTATGAATAAGATGGGAGAATGGTGTCAGGCTCATCATGGTGCTAGTGGACTGACAGAGAGAGTGATCCAGAGTACCATTAGTGAACGAGAAG CTGAATTACAGGTTATAGAATTCATAAAGAAGCATGTTGGTACATATACGCCACAGATAGCTGGAAATTCTGTCTACATGGATTTGCTTTTCATAAGGAA ATATATGCCAGAGTTGGCTAGCCTCTTCAGTCATGTTATTGTCGACGTCAGTAGCGTTAGATCTCTGTGCATACGCTGGTATCGCAAAGATCACGAGAGA GCCCCTGCCAAGGCGAATAAGCATAGAGCCCTAGATGATATCAAAGAAAGCATCAATGAACTCAAGTACTACAAACAGAGCATATTCAAGGCCCAGAAGT CCAAATAA
AA sequence Show only first row Show all	>Lus10037420 pacid=23152381 polypeptide=Lus10037420 locus=Lus10037420.g ID=Lus10037420.BGIv1.0 annot-version=v1.0 MERLANAFSVLDLDVEDDRPPTAPSSSTSGKGKKAVKNDKPIQEERVASSGPYTMPLVWIDLEMTGLDVEADRIIEIACIITDGKLTKLVEGPELVIHQS EECMNKMGEWCQAHHGASGLTERVIQSTISEREAELQVIEFIKKHVGTYTPQIAGNSVYMDLLFIRKYMPELASLFSHVIVDVSSVRSLCIRWYRKDHER APAKANKHRALDDIKESINELKYYKQSIFKAQKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26970			Polynucleotidyl transferase, r...		Lus10037420 [exp]	0	1
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	2.4	0.8605
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026140 [exp]	7.1	0.8257
AT5G60370			unknown protein		Lus10038466 [exp]	9.5	0.8098
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10025920 [exp]	11.5	0.8087
AT1G73620			Pathogenesis-related thaumatin...		Lus10009058 [exp]	15.3	0.8632
AT4G39955			alpha/beta-Hydrolases superfam...		Lus10000630 [exp]	26.3	0.8305
AT3G02820			zinc knuckle (CCHC-type) famil...		Lus10012910 [exp]	26.4	0.8495
AT3G53320			unknown protein		Lus10026478 [exp]	31.3	0.7847
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	39.6	0.8459
AT4G24265			unknown protein		Lus10007441 [exp]	41.0	0.8118

Compare expression of checked genes

Lus10037420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.