Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53530 507 / 0 VPS26A vacuolar protein sorting 26A (.1) AT4G27690 502 / 0 VPS26B vacuolar protein sorting 26B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023242 [exp] 501 / 4e-178 AT5G53530 538 / 0.0 vacuolar protein sorting 26A (.1) Lus10008868 [exp] 478 / 6e-172 AT5G53530 503 / 0.0 vacuolar protein sorting 26A (.1) Lus10041291 [exp] 318 / 2e-107 AT5G53530 432 / 3e-153 vacuolar protein sorting 26A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222500 [exp] 543 / 0 AT5G53530 523 / 0.0 vacuolar protein sorting 26A (.1) Potri.009G021200 [exp] 536 / 0 AT5G53530 519 / 0.0 vacuolar protein sorting 26A (.1) Potri.006G081300 [exp] 518 / 0 AT4G27690 566 / 0.0 vacuolar protein sorting 26B (.1.2) Potri.018G150900 [exp] 515 / 0 AT4G27690 542 / 0.0 vacuolar protein sorting 26B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0135 [flax] [poplar] Arrestin_N-like PF03643 [flax] [poplar] Vps26 Vacuolar protein sorting-associated protein 26
Representative CDS sequence Show only first row Show all	>Lus10037421 pacid=23152409 polypeptide=Lus10037421 locus=Lus10037421.g ID=Lus10037421.BGIv1.0 annot-version=v1.0 ATGCTGGTGGGTTGGTTCTCTACTGTTCAGAATTTCCTCATTGGAGCTTTCAAGCCACCCTGCAACATTTCAATAGTTTTTGTTGACAGAAGAAGTCGCA AGCAGGTTCCGCTAAAGAAGGAAAATGGTCAGATAGCTACAGTTCCTCTCTATCAGAGTCAAGAAAACATTGCCGGAGAGGTTGTTGTAGAACCTACACA AGGGAAGAAGGTTGAACACAATGGGATAAAAATTGAGTTGCTTGGGCAGATAGGTATAAGAGAGAACTTGTCCTTTCCCAATTTGGTTACGCTAGAACTG TATTTTGACCGTGGAAACTTCTATGATTTTACTTCCCTTGTGCGTGAACTTGATGTACCTGGTGACTTGTATGAAAAGAAATCGTATCCCTTTGAGTTTT CAACTGTTGAAATGCCGCATGAGTCCTACAGTGGAGTCAATGTGAGGCTCAGGTATATATTGAAGGTGACGATCAATCGGAATTATGTCAACAACATTGT CGAGCACCAGGATTTCGTGGTGCGGAATTACACTCCACAACCACCAGTTAATAACAGCATCAAGATGGAAGTTGGAATCGAGGACTGTCTTCATATAGAA TTTGAATACAATAAGAGCAAGTACCATCTGAAGGATGTAATCATTGGGAAAATTTATTTCCTCTTGGTAAGAATTAAAATCAAGAATATGGAGCTTGAGA TTCGACGTCGTGAATCAACAGGATCAGGGCCTAACACGTACGTCGAGACAGAGACGCTTGCAAAATACGAGTTGATGGATGGTGCCCCTGTAAGAGGAGA ATCTATTCCGGTCAGGCTATTCCTTAGTCCGTATGAGCTGACACCTACATATCGAAACATCAACAACAAGTTCAGCGTGAAGTATTACTTGAATCTTGTC CTAGTAGACGAAGAAGATCGGCGATATTTTAAACAGCAGGAAATCACGGTATATCGGCTCCTGGAGACTTCTTGA
AA sequence Show only first row Show all	>Lus10037421 pacid=23152409 polypeptide=Lus10037421 locus=Lus10037421.g ID=Lus10037421.BGIv1.0 annot-version=v1.0 MLVGWFSTVQNFLIGAFKPPCNISIVFVDRRSRKQVPLKKENGQIATVPLYQSQENIAGEVVVEPTQGKKVEHNGIKIELLGQIGIRENLSFPNLVTLEL YFDRGNFYDFTSLVRELDVPGDLYEKKSYPFEFSTVEMPHESYSGVNVRLRYILKVTINRNYVNNIVEHQDFVVRNYTPQPPVNNSIKMEVGIEDCLHIE FEYNKSKYHLKDVIIGKIYFLLVRIKIKNMELEIRRRESTGSGPNTYVETETLAKYELMDGAPVRGESIPVRLFLSPYELTPTYRNINNKFSVKYYLNLV LVDEEDRRYFKQQEITVYRLLETS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	0	1
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	2.4	0.9244
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	3.5	0.9150
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	7.5	0.8938
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	8.1	0.9136
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	8.8	0.8791
AT1G04555			unknown protein		Lus10023715 [exp]	9.2	0.9077
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	9.8	0.9116
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	10.4	0.9059
AT4G04740		CPK23, ATCPK23	calcium-dependent protein kina...		Lus10022624 [exp]	11.0	0.9067
AT5G01010			unknown protein		Lus10042743 [exp]	13.7	0.9049

Compare expression of checked genes

Lus10037421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.