Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65950 1298 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041289 [exp] 2066 / 0 AT5G65950 1410 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144700 [exp] 1522 / 0 AT5G65950 1512 / 0.0 unknown protein Potri.001G457201 [exp] 670 / 0 AT5G65950 744 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0212 [flax] [poplar] SNARE PF07919 [flax] [poplar] Gryzun Gryzun, putative trafficking through Golgi CL0020 [flax] [poplar] TPR PF11817 [flax] [poplar] Foie-gras_1 Foie gras liver health family 1
Representative CDS sequence Show only first row Show all	>Lus10037422 pacid=23152320 polypeptide=Lus10037422 locus=Lus10037422.g ID=Lus10037422.BGIv1.0 annot-version=v1.0 ATGGAGGAGTATCCGGAGGAGTTACGGACGCCGCCCGTAGGTCTGATATCGCTAGTCGGATGCCCTGAGCTCCACGCGCTCATCTCCTCTCACCTCCACT CCGAACAGCCTCCCATCAACACTCTTGCCTTGCCTGACTTCTCTAAGATCTCCGTGATTTTCTCCGGCAAAATCTCCGATGCCAAACCACCATCTTCATC AACCGATCCCAACTCTGTCCCTCCCGGCATTCTCAAGAGAGACTGGTTGCTCAAGCATCGCACTAAGGTTCCCGCTGTCCTCGCCGCTCTTTTTACTTCG GAACAGATCTCTGGCGATCCAGCTCAGTGGCTTCAGGTCTGTACAGACCTTGAAAATCTCAGAAATGTGATGCGTCCCAAGAACATAAAGCTCGTGGTTG TTATTGTTGTGCCCCCGTCGTTTTATTCTTCTTCCGGTGATGAAATTATCAGCGAAGATAGAATGGCTGCTCTTCGCAAACGAGCTGAATTGGATGCTAA ACAAGTTGTTTTTTTCAACTCCGGTGATGAATTACAACTTAAGGAGTCCCTTAACAAGCTAGCAAGTACTTTAGCTGAATTAGCAGCTACATATTATAGA GAAGAAGGACGTAGGATCAAGGCTCTTGTGGAGAAGAAGAACATCAACGATATTCAGTTGAATATTCGTAGTTGTTTTAAGGTTGCTGTCTATGCGGAGT TTAGGAGAGATTGGGCAGAAGCTTTGAGGTTTTATGAGGATGCATACCATATGTTGCGGCAGATGGTTTCAACAGCAAATAGCTTACCTGTTATTCAACG GTTGGTTGAGATAAAAATTGTTGCAGAGCAGTTGCATTTCAAAATATCGACTTTGTTACTTCATGGTGGGAAGATAGCTGATGCAATTTCATGGTTCCGC AAGGATAACACTTCTTACAGGAATCTAGTAGGTCCTCTAGTAGCTATTTTTTTGCATTGGGAGTGGATGAGCCGGCAGTTTCTTGTATTTGCTGAATTGC TTGAAACAAGCTCAAAAGCCATCCAGAGTATTTCTGGTCCTGCTTCAAATAGCGCAGATAAATTTTTGACTGAGTGGGAATTTCAACCAGCATATTACTA TCAGTTAGCCGCTCACTACCTCAAGGAGAAGAGAAATGCATTGGAACTTGCGCAGCCAAGTTCTGGAGCAGCTGATGGCAGTGCTGAATCTGTAGCACCT TCAGTTTATGTAGGACAGTTTGCTCGGCTGCTTGAGCAAGAGAATGCATTAGATATGCAACCTCTTACTGATGAAGAATATACCCTTTATGCTATTGCAG AAGGGAAAAGGTTCCAAGATTCCTTTGAAATTATTGCTCTTCTTAAACGATCTCATGAATCATTCTCAAGTCTCAAGGCCACGAGGATGGGTTCTCTTTG TGCACTCCAGATGGCTAAGGAATATTACACTGTTGGAGACTTCAATAATGCAAAACCGTTACTTGATGGTGTTGCAAGTCTGTACAGATCGGAAGGATGG GTGACTTTATTGTGGGAAGTTTTGGGTTATCTGCGGGAATGTTCTAGAAAAGCTGGCATGGTAAAAGAATTTGTGGAGTACTCTCTTGAAATGGCTGCAC TGCCTGTATCTGATACAAGTGAACAATCTGTTGGTTCTAAAGACTGTGGTCCTGCTGGTCCTACGAGTCTTGCTCAACGAGAAAATATACACAAGGAGGT TTTCTCTCTTGTCAGCGGAGAAGGAGGATCAGTGTCAGTCGAAAAAAATAGTGATCTCCACCCTGCTTTGAATGGTCCTTTGCATCTTGAGATAGATCTT GTCAGCCCTCTTCGAGTTGTCCTGCTCGCCTCAGTTGCTTTTCATGAACAGATAATTAAACCTGGCGTGCCTGCCTTAATTACAGTATCACTTTTGTCCC AGTTACCTATGAATGTTGAGATTGATCAATTGGAATTTCGGTTCAATCAATCAGAATGTAACTTTGTCATCATTAATTCCGAAAGACCTTCATCTGATGG ACAACAAGGTCGACGTGTTGAAAGCGCTCCTTCTCTGACACTTATTACAAACAAGTGGCTACGCTTGACATATTCTGTCCAATCAGAAATGAGTGGCAAG CTGGAATGCATATATGTTATAGCAAAAATGAGATCCCACCTGACAATCTGCTGTAGAGCTGAAAGTCCTGCTTCAATGGATGATTTACCTATTTGGAGAT TTGAAGACCGTGTGCAGACTTTTCCGACAAAGGATCCTGCTCTTGCATTTTCAGGCCAAAAGGCTGCCCAGGTTGAGGAACAAGACCCTCAAGTGGATCT TGTTCTTGGTGCTACAGGACCTGCACTGGTTGAAGAGTGCTTCATTGTTCCTGTTACCCTTACCTCCAAGGGCCACTCGGTGTTTTCGGGTGAGTTGAAG ATCAATTTGGTTGATGTTAAAGGCGGCGGCTTATTTAGTCCCAGGGAAGTGGAGCCGCTTGCCTCGGAGAGTCATCACGTCCAGCTTCTTGGTGTCACTA CGCCAGAGACAGAGGATGATCCTCAAGTAGCTTCCAGTAAAATCAAGAAAATTCAGCAGTCTTTCGGCTTGGTCTCTGTCCCATTTTTGAAAGACGGAGA AACATGGTCCTGCAAACTGGAAATTAGGTGGAACCGACCTAAACCTATCATGCTATTCGTTTCACTCGGATATTTTCCCAATGTCAATGAATCGAGTTCG CAGAAAGCTCACGTCCACAAAAGCTTGCAGATTGAAGGAAAGACTGGTATCGTGATCAACCATCACTTTATGTTGCCGTTCCACAAGGATCCACTATTGC TTTCAAGGATCAAGCCCAGCCCCGACTCGAAACAGCCTTCACTGCCCATGAACGAAACGACTGTTCTTGTTGTCAGTGCTAAGAACTGCTGTGAAGTGCC ATTGCAATTACAATCCGTCTCTATCGATATGGACGATGATTGTGAAAGGCTGTATAAACTACAACACGGAGGTGGTGAAGATCTTTTAAAGATTCCCCAC CTTATGCCTGGAGAAGAGTTGAGAAAGGTCTTCACCATCATTCCTGAGGTGAAATCTTCGAGTCTTGTCTTAGGATCAGTGTGCGTAAGATGGAGAAGGA CAGACGTCCAGAATTTCGTGCTATCCGGATCCCACACCGACACTGTTTTCATCCTTCCAGGGTCTGAACGCGTTGTTTCATACAAGATCGTGCCGCTGTG TTCTGGTATGCAACAGCTGCCTCGGGTGACGGTGACTTCGATTAGATATTCAGCTGCATTTCAACCGTCGGTCGCTGCTTCTATGGTTTTTGTGTTCCCT TCCAAGCCTCAGTTCCAGATATCTGGAAGTACAGTGTTGGAAGCTGTAAGCACTGAGTAA
AA sequence Show only first row Show all	>Lus10037422 pacid=23152320 polypeptide=Lus10037422 locus=Lus10037422.g ID=Lus10037422.BGIv1.0 annot-version=v1.0 MEEYPEELRTPPVGLISLVGCPELHALISSHLHSEQPPINTLALPDFSKISVIFSGKISDAKPPSSSTDPNSVPPGILKRDWLLKHRTKVPAVLAALFTS EQISGDPAQWLQVCTDLENLRNVMRPKNIKLVVVIVVPPSFYSSSGDEIISEDRMAALRKRAELDAKQVVFFNSGDELQLKESLNKLASTLAELAATYYR EEGRRIKALVEKKNINDIQLNIRSCFKVAVYAEFRRDWAEALRFYEDAYHMLRQMVSTANSLPVIQRLVEIKIVAEQLHFKISTLLLHGGKIADAISWFR KDNTSYRNLVGPLVAIFLHWEWMSRQFLVFAELLETSSKAIQSISGPASNSADKFLTEWEFQPAYYYQLAAHYLKEKRNALELAQPSSGAADGSAESVAP SVYVGQFARLLEQENALDMQPLTDEEYTLYAIAEGKRFQDSFEIIALLKRSHESFSSLKATRMGSLCALQMAKEYYTVGDFNNAKPLLDGVASLYRSEGW VTLLWEVLGYLRECSRKAGMVKEFVEYSLEMAALPVSDTSEQSVGSKDCGPAGPTSLAQRENIHKEVFSLVSGEGGSVSVEKNSDLHPALNGPLHLEIDL VSPLRVVLLASVAFHEQIIKPGVPALITVSLLSQLPMNVEIDQLEFRFNQSECNFVIINSERPSSDGQQGRRVESAPSLTLITNKWLRLTYSVQSEMSGK LECIYVIAKMRSHLTICCRAESPASMDDLPIWRFEDRVQTFPTKDPALAFSGQKAAQVEEQDPQVDLVLGATGPALVEECFIVPVTLTSKGHSVFSGELK INLVDVKGGGLFSPREVEPLASESHHVQLLGVTTPETEDDPQVASSKIKKIQQSFGLVSVPFLKDGETWSCKLEIRWNRPKPIMLFVSLGYFPNVNESSS QKAHVHKSLQIEGKTGIVINHHFMLPFHKDPLLLSRIKPSPDSKQPSLPMNETTVLVVSAKNCCEVPLQLQSVSIDMDDDCERLYKLQHGGGEDLLKIPH LMPGEELRKVFTIIPEVKSSSLVLGSVCVRWRRTDVQNFVLSGSHTDTVFILPGSERVVSYKIVPLCSGMQQLPRVTVTSIRYSAAFQPSVAASMVFVFP SKPQFQISGSTVLEAVSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65950			unknown protein		Lus10037422 [exp]	0	1
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	1.7	0.9558
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10042856 [exp]	2.4	0.9503
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	3.5	0.9514
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	4.0	0.9319
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	4.5	0.9398
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	6.9	0.9408
AT2G46520			cellular apoptosis susceptibil...		Lus10030241 [exp]	6.9	0.9226
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10011285 [exp]	7.9	0.9362
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	9.2	0.9037
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10031570 [exp]	9.5	0.9308

Compare expression of checked genes

Lus10037422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.