Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21170 298 / 5e-102 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT4G16360 253 / 2e-84 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT2G28060 87 / 1e-21 5'-AMP-activated protein kinase beta-2 subunit protein (.1) AT1G09020 54 / 5e-08 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 49 / 2e-06 5'-AMP-activated protein kinase-related (.1) AT5G03420 45 / 2e-05 5'-AMP-activated protein kinase-related (.1) AT3G01510 45 / 4e-05 LSF1 like SEX4 1 (.1) AT5G39790 42 / 0.0002 5'-AMP-activated protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041287 [exp] 425 / 2e-151 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10038783 [exp] 233 / 6e-76 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10039076 [exp] 233 / 1e-75 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10006390 [exp] 163 / 7e-49 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10012343 [exp] 158 / 7e-48 AT4G16360 220 / 1e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10003355 [exp] 96 / 5e-25 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 96 / 9e-25 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10029909 [exp] 64 / 3e-11 AT1G09020 749 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1) Lus10004490 [exp] 63 / 4e-11 AT1G09020 754 / 0.0 homolog of yeast sucrose nonfermenting 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G220800 [exp] 311 / 6e-107 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 307 / 2e-105 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.016G006400 [exp] 246 / 5e-81 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 244 / 2e-80 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.014G167400 [exp] 189 / 6e-59 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.009G008700 [exp] 90 / 1e-22 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 86 / 5e-21 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.010G034600 [exp] 52 / 1e-07 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1) Potri.008G194300 [exp] 52 / 1e-07 AT1G27070 367 / 3e-121 5'-AMP-activated protein kinase-related (.1) Potri.001G349000 [exp] 50 / 9e-07 AT3G01510 775 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [flax] [poplar] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain
Representative CDS sequence Show only first row Show all	>Lus10037424 pacid=23152456 polypeptide=Lus10037424 locus=Lus10037424.g ID=Lus10037424.BGIv1.0 annot-version=v1.0 ATGCAGATACAGCGGCCTCTGCCGCCGCCGCCAACGAATCCAGCCGGTCCTGTGCAGCCAATCAATAATAATAACAGCACTCCGCCTCATAGCCCAGCTC GCTCCTCCTCGCCTCGCTTGTTTGCTCCTCAGGTTCCTGTAGCTCCAATACAAAGGCCTGATGGTTTCCCTCTTCAAGTGTGGCCAAACGAGCCTCAACC CGTTGTGGATCAATCTTCTTCTGTTAAGGGTATCCCCACAGTTATCATTTGGACCTATGGTGGTAAGGAGGTAGCTGTGGAGGGATCGTGGGATAATTGG CAGTCAAGGAAGTTGATGCAAAGATCAGGAAAGGATCATTCTATTCTTCTCGTTCTTCCATCTGGGATATACCACTATAAGTTCATAGTCGATGGCGAGT GGAGATATACACCGGACCTCCCTTTTGTAGCCGATGAAATGGGCCATGTTTGTAATATCCTTGATGTTAATGATTATGTACCAGAAAACCCGGATAGTGT GTCAGAGTTTGAAGCCCCGGCATCACCAGACTCGAGTTATGCTAATATGTTACCATCTGAAGAAGATTTTGCAAAGGAGCCAGTAGTTGTTCCGCCACAG TTGCATCTTACTGTTCTTGGCATGGAGAACTCAGGTGAACCACCTGCTTCATCTTCCCCTCCTTCAAAGCCTCAGCATGTTGTGCTGAACCACCTCTTTA TCGAAAAAGGATGGGCTTCTCAGTCACTGGTCGGTCTCGGGCTGACTCACCGGTTTGAATCCAAATATGTCACTGTTGTCCTTTATAAGCCACTGAAAAG GTAG
AA sequence Show only first row Show all	>Lus10037424 pacid=23152456 polypeptide=Lus10037424 locus=Lus10037424.g ID=Lus10037424.BGIv1.0 annot-version=v1.0 MQIQRPLPPPPTNPAGPVQPINNNNSTPPHSPARSSSPRLFAPQVPVAPIQRPDGFPLQVWPNEPQPVVDQSSSVKGIPTVIIWTYGGKEVAVEGSWDNW QSRKLMQRSGKDHSILLVLPSGIYHYKFIVDGEWRYTPDLPFVADEMGHVCNILDVNDYVPENPDSVSEFEAPASPDSSYANMLPSEEDFAKEPVVVPPQ LHLTVLGMENSGEPPASSSPPSKPQHVVLNHLFIEKGWASQSLVGLGLTHRFESKYVTVVLYKPLKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	0	1
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	2.0	0.8228
AT3G12150			unknown protein		Lus10023826 [exp]	2.8	0.8209
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	6.9	0.8107
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	7.9	0.7835
AT1G19050		ARR7	response regulator 7 (.1)		Lus10036642 [exp]	8.4	0.7149
AT4G38470		STY46	serine/threonine/tyrosine kina...		Lus10022653 [exp]	8.5	0.7658
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	10.5	0.8003
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	11.1	0.7202
AT2G02148			unknown protein		Lus10031926 [exp]	13.0	0.7287
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	13.4	0.8025

Compare expression of checked genes

Lus10037424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.