Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14780 512 / 1e-175 MAC/Perforin domain-containing protein (.1) AT4G24290 487 / 7e-166 MAC/Perforin domain-containing protein (.1.2) AT1G28380 449 / 5e-151 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G29690 410 / 1e-136 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041285 [exp] 1231 / 0 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10035789 [exp] 494 / 2e-168 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10012717 [exp] 465 / 2e-157 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 459 / 4e-155 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 449 / 1e-151 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 448 / 1e-150 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 401 / 4e-133 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10034586 [exp] 411 / 1e-132 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 394 / 3e-130 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234700 [exp] 967 / 0 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 547 / 0 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 538 / 0 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.003G006500 [exp] 506 / 2e-173 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 484 / 3e-165 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.001G305600 [exp] 475 / 1e-161 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 471 / 9e-160 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 462 / 2e-156 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.016G135100 [exp] 401 / 7e-133 AT1G29690 717 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.006G107900 [exp] 401 / 7e-133 AT1G29690 703 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10037426 pacid=23152585 polypeptide=Lus10037426 locus=Lus10037426.g ID=Lus10037426.BGIv1.0 annot-version=v1.0 ATGGAGGCTCCCGAGAAGCCGATTGAGCTCAGGGCAATTGACGCCTTGGGGAAAGGCTTCGACCTCAGCAGCGATTTCAGGTTAAAGTTCGCCAAGAGCG CCGCCGGGAGACTGCTGGTCCTCGACGAGCGGAACAAGAGGGACATTATAATCCCTTCCGGCGGCGGCGGTGGCGGTGGCGGAGTTACTGTTCCTGACGT CTCCGAGGATATTCATGTCGACAAAGGCGATCGGATTCGGTTCAAGTCCGATGTCCTGGAGTTCAATCAGATGTCAGAGCTGCTTAATCAGAGATCTTCA ATACAAGGAAAAATTCCTTCTGGCTATGCCAATGCTCTGTTTGACTTGAGTGGAGACTGGCTCCTTGATGCCACAGACACTAAATGTCTTGCTTTTGATG GCTACTTCATCTCTTTGTACAACTTGCACCTAACAGCATCTCCACATGTGCTCCATGACAAAGTGAAGAATTCAGTACCACCTCGTTGGGATCCAGCACT ACTGTCCAGGTTCATACGGACATATGGCACGCACATAATTATAGGGATGGCAATTGGAGGTCAGGATGTGATATGTGTTAGACAAAAACACTCCTCAACC ATTTCTCCTGCCAATCTTCGAAAGAATTTGGAGGATCTCGGAGATTTTCTGTTTTCAGATGGCAGAAGTCCATCCCTGATGCATGGAAATGCAAGAGATG GCAAGCAAAAGATTCCTGAGGTTTTCAATAGGATTCTGCAGTCAAATACCATGCAACTGACCAGCATCACAGAAACGTCAAGCAAGGAGGGTCTCACCAT CGTTTGTTCGAAAAGGGGAGGGGACGTGTTCTCACATAGTCATTCTAACTGGTTACAAACCGTCCCTGCAAAGCCAGAAGCAATCCTCTTCAAGTTTGTG CCGATTACTTCTCTTCTCGCTGGGGTTCCTGGCAGTGGATTTCTCAGTCATGCTATCAACTTGTATTTACGATACAAGCCTACCCCTGACGATCTACAAT GCTTTTTGGAATACCAAGTACCAAAGCAATGGGCACCCATGTTCTGCGAGTTAACTCTGCGGCATCAAAGGAAGAAGGCCTCCTCCCCATCTCTGCGATT CAGCTTTATGGGTCCTCGGCTATATGTTAGTTCTACCCAGGTTTCAAGTGATAAAAAACCAGTCGTCGGATTGCGGTTGTATCTCGAAGGAAAGAAGTGC AACAAGCTTGCCATACATATTCAGCATCTGTCAAGCCTTCCAAATATTATGAACTCATCAGCTAACGCTACCGACACCAAACCATGCCAATGGCAAGGCT CCGATCAGTACGCATCAAGCGACCAATTCCTCGAACCAGTTCGATGGAGGAGATACTCAAAGATCTGCACTTCTGTCGTGAAGCACGATCCCAGTTGGCT GCACGGAGACTCGACAGGAGTTTTCGTTGTGACCGGTGCGCAGCTTCAAAGCAAAGGAAGATGGCCAAACTCGGTACTCCACCTGCGTCTACTATTCACC CACTTACCACACTGCAGCATCCGGAAGACCGAATGGGCAGCGGTTCCGGAAGCTTCTCACAAAACGAGCCTCCTGACGAATATCAGCACAACATTCACGT TCACTCAGCGGACGAACCCTGGTCAGAACAAACAGCAAGCTCCGGCGGCTCTCAACTCCGGTGTGTATGCAGAGGGTCCCCCAGTTCCGGTTAGCTCGCG GAAGCTTCTTAAGTATGTGGAGACTGCTGAGGTGGTGCGAGGGCCTCATGATGCCCCTGGACATTGGTTGGTGACGGCGGCTAAGCTAGTAGGCGAGGGC GGTAAGATTGGGCTACATGTGAAGTTTGCACTGCTGGACTATCCAGATTGCTGA
AA sequence Show only first row Show all	>Lus10037426 pacid=23152585 polypeptide=Lus10037426 locus=Lus10037426.g ID=Lus10037426.BGIv1.0 annot-version=v1.0 MEAPEKPIELRAIDALGKGFDLSSDFRLKFAKSAAGRLLVLDERNKRDIIIPSGGGGGGGGVTVPDVSEDIHVDKGDRIRFKSDVLEFNQMSELLNQRSS IQGKIPSGYANALFDLSGDWLLDATDTKCLAFDGYFISLYNLHLTASPHVLHDKVKNSVPPRWDPALLSRFIRTYGTHIIIGMAIGGQDVICVRQKHSST ISPANLRKNLEDLGDFLFSDGRSPSLMHGNARDGKQKIPEVFNRILQSNTMQLTSITETSSKEGLTIVCSKRGGDVFSHSHSNWLQTVPAKPEAILFKFV PITSLLAGVPGSGFLSHAINLYLRYKPTPDDLQCFLEYQVPKQWAPMFCELTLRHQRKKASSPSLRFSFMGPRLYVSSTQVSSDKKPVVGLRLYLEGKKC NKLAIHIQHLSSLPNIMNSSANATDTKPCQWQGSDQYASSDQFLEPVRWRRYSKICTSVVKHDPSWLHGDSTGVFVVTGAQLQSKGRWPNSVLHLRLLFT HLPHCSIRKTEWAAVPEASHKTSLLTNISTTFTFTQRTNPGQNKQQAPAALNSGVYAEGPPVPVSSRKLLKYVETAEVVRGPHDAPGHWLVTAAKLVGEG GKIGLHVKFALLDYPDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	0	1
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	3.2	0.9154
AT4G12070			unknown protein		Lus10031257 [exp]	4.2	0.8886
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	6.7	0.8715
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	7.3	0.8788
AT1G24330			ARM repeat superfamily protein...		Lus10006427 [exp]	9.4	0.8261
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	9.5	0.8848
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028198 [exp]	15.7	0.8054
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10006056 [exp]	15.8	0.8270
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	17.4	0.8827
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	17.9	0.8516

Compare expression of checked genes

Lus10037426 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.