Plant FIBer expression Database

Lus10037427 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041284
[exp]
375 / 3e-133 AT1G55200 44 / 7e-05 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G146500
[exp]
155 / 1e-46 AT1G55200 52 / 1e-07 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Potri.001G141900
[exp]
75 / 3e-16 ND /
PFAM info
Representative CDS sequence
>Lus10037427 pacid=23152552 polypeptide=Lus10037427 locus=Lus10037427.g ID=Lus10037427.BGIv1.0 annot-version=v1.0
ATGTCACTGTCATATGACAAGATGAGAGAAGGAAGACAAGTCAGGTCCTGTCCCCGATCCCATTCTGTTGCTGAGGTTTTGATACCACGGGAATCCCCTG
GTTCCACTGGAAAACATGTAGTGACCGTGATGGATGCAATGAAGGAATTCTCCACAGAGCCCCTTCAGTGGGCACTGGACTTTGTTATTGAGGTTGGATG
GTCAGTTACCCTCCTTGGAATCATGCCATGGGTTCCTTTCCCTTGTAAGCACTCTCGTTCTCTCGTCTATTGGTCTGTTTTATTGCATACTGGTCAGCAG
ATTGCCATCTTCTGCTTAACCTGGTTGGTTTGCTTCCTCTTTTCTCTACCTGTACTAGTTTCGTGCAATATAAGGTTAGATGTTTGGAGACATGTTCTTG
AAGATATGCAAGGTCAGAAGGGAATGAGTGAGTGGATAAATGACCTGAAACACCAGAAGAAACAGGAGATGGTAGAGGCTTGCAAGCAGAAACGGGTGGT
CCCTTGCATGAAAGTGGCAATGGGACATCCTCTGAAGCTTGTGGTTCTTGAGCAAATTACAAGCATTCCGGGCAGTGCAGTGATGATGAATAGGCATGGA
GGGCTGGATGTGATCAAACTGAAAGCAAGAACTCACGGGGAGTTGGACTCAACGCCAGGAGTTCCAGGAGAATCTCCGGCAACAGTAGTTCCGACACCGG
AAGTTATTCTCTCAGAGGAGCTGCTGGGACGGCTGAGGCGCCAGACTAGCATTTGA
AA sequence
>Lus10037427 pacid=23152552 polypeptide=Lus10037427 locus=Lus10037427.g ID=Lus10037427.BGIv1.0 annot-version=v1.0
MSLSYDKMREGRQVRSCPRSHSVAEVLIPRESPGSTGKHVVTVMDAMKEFSTEPLQWALDFVIEVGWSVTLLGIMPWVPFPCKHSRSLVYWSVLLHTGQQ
IAIFCLTWLVCFLFSLPVLVSCNIRLDVWRHVLEDMQGQKGMSEWINDLKHQKKQEMVEACKQKRVVPCMKVAMGHPLKLVVLEQITSIPGSAVMMNRHG
GLDVIKLKARTHGELDSTPGVPGESPATVVPTPEVILSEELLGRLRRQTSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10037427
[exp]
0 1
AT1G76750 Protein of unknown function (D... Lus10027057
[exp]
1.0 0.7990
AT1G20650 ASG5 ALTERED SEED GERMINATION 5, Pr... Lus10016021
[exp]
2.4 0.7721
AT2G01130 DEA(D/H)-box RNA helicase fami... Lus10007938
[exp]
10.8 0.7752
AT1G77270 unknown protein Lus10042760
[exp]
23.7 0.7328
AT2G19090 Protein of unknown function (D... Lus10020009
[exp]
26.7 0.7335
AT2G47230 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724... Lus10010060
[exp]
28.2 0.7362
AT2G01570 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSO... Lus10018101
[exp]
30.8 0.7214
AT1G66170 MMD1 MALE MEIOCYTE DEATH 1, RING/FY... Lus10031357
[exp]
32.3 0.6097
AT2G23770 protein kinase family protein ... Lus10016299
[exp]
32.6 0.7249
AT5G02440 unknown protein Lus10023770
[exp]
36.1 0.7101

Lus10037427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.