Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05850 463 / 2e-165 CTL1, HOT2, ERH2, ELP1, POM1, ATCTL1 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) AT3G16920 434 / 1e-153 ATCTL2 chitinase-like protein 2 (.1) AT3G12500 181 / 2e-54 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT1G02360 169 / 1e-50 Chitinase family protein (.1) AT4G01700 159 / 1e-46 Chitinase family protein (.1) AT2G43570 96 / 1e-22 CHI "chitinase, putative", chitinase, putative (.1) AT2G43610 89 / 2e-20 Chitinase family protein (.1) AT2G43590 89 / 3e-20 Chitinase family protein (.1) AT2G43580 82 / 5e-18 Chitinase family protein (.1) AT3G54420 82 / 9e-18 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037430 [exp] 555 / 0 AT1G05850 505 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041278 [exp] 553 / 0 AT1G05850 504 / 0.0 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10037737 [exp] 415 / 3e-146 AT3G16920 499 / 2e-179 chitinase-like protein 2 (.1) Lus10016872 [exp] 328 / 6e-114 AT3G16920 354 / 5e-124 chitinase-like protein 2 (.1) Lus10041282 [exp] 218 / 7e-72 AT1G05850 192 / 2e-62 POM-POM1, SENSITIVE TO HOT TEMPERATURES 2, ECTOPIC ROOT HAIR 2, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ECTOPIC DEPOSITION OF LIGNIN IN PITH, CHITINASE-LIKE PROTEIN 1, Chitinase family protein (.1) Lus10041830 [exp] 171 / 9e-51 AT3G12500 402 / 4e-141 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10028377 [exp] 171 / 1e-50 AT3G12500 393 / 1e-137 PATHOGENESIS-RELATED 3, basic chitinase (.1) Lus10038026 [exp] 162 / 8e-48 AT1G02360 412 / 9e-147 Chitinase family protein (.1) Lus10009968 [exp] 161 / 1e-47 AT1G02360 409 / 1e-145 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141600 [exp] 452 / 4e-161 AT3G16920 458 / 4e-163 chitinase-like protein 2 (.1) Potri.014G146600 [exp] 450 / 4e-160 AT3G16920 456 / 2e-162 chitinase-like protein 2 (.1) Potri.004G182000 [exp] 181 / 1e-54 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 177 / 8e-54 AT4G01700 422 / 1e-150 Chitinase family protein (.1) Potri.009G142300 [exp] 174 / 7e-52 AT3G12500 340 / 1e-116 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 173 / 2e-51 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.004G182100 [exp] 173 / 3e-51 AT3G12500 306 / 7e-103 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141800 [exp] 171 / 1e-50 AT3G12500 351 / 9e-121 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G142150 [exp] 166 / 5e-50 AT3G12500 365 / 8e-128 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.002G186500 [exp] 162 / 4e-48 AT1G02360 413 / 2e-147 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10037428 pacid=23152402 polypeptide=Lus10037428 locus=Lus10037428.g ID=Lus10037428.BGIv1.0 annot-version=v1.0 ATGGCTGCTAGTGATTCCAACCGCAGCATTTCGGCCGCATTGCTGCTCCTGCTGCTGTACGTGGTGAACTTGGCGGCGGTTGTTCGCGGCGACAAATCGG AGCAGACGGTGGTGGTGAAGAAGGTGAAGGGGAAGAAGTACTGTACGAAGGGTTGGGAGTGTAAAACGCCTTCTGTTTACTGCTGCAATCAGACGATTTC GGATATCTTCCAGGTTTACCAGTTCGAGGAGCTCTTCGCCAAGAGGAATTCCCCCGTCGCTCACGCCGTCGGGTTCTGGGATTACCAGTCCTTGATTATC GCCTCCTCTCTGTACCAGCATCTCGGCTTCTGCACCACCGGAGGGAAGCTCATGCAGATGAAGGAGCTGGCCGCATTTCTTGGCCATGTCGGCGCCAAAA CTTCTTGTGGTTATGGAGTGGCAACCGGAGGGATCACCGCCTGGGGTCTATGCTACAATAGGGAAATGAGCCCTTCACAGTCTTACTGTGATGACTACTA CAAAGATACATATCCTTGTGCTCCTGGAGCTGATTACTATGGCCGAGGTGCCATTCCGATTTACTGGAATTATAATTATGGTGCCGTTGGAGAAGCTATC AAGGAGGATTTGTTGAACCATCCCGAGTACATTGAGCAAAATGCTACGCTTGCTTTCCAGGCTGCCATATGGAGATGGATGACCCCAATCAAGAAGTCAC AACCTTCAGCTCATGATGTCTTCGTTGGAAAATGGAAGCCGACTAAGAACGACACCCTGTCGAAGCGCGTTCCTGGTTTTGGCTCAACAATGAACATTCT ATACGGTGACAACGTTTGCGGCCAGGGTGTTATTGATGACATGAACAGCATCATCTCCCATTACCTTTATTACCTTGACTTGATGGGTGTAGGCCGAGAG GATGCTGGGAGTCATGATATCCTCACTTGTGAGGATCAAGCACTATTCAACCCACGAAAGGCCAATCCTAGTCAAGCCTCGTAA
AA sequence Show only first row Show all	>Lus10037428 pacid=23152402 polypeptide=Lus10037428 locus=Lus10037428.g ID=Lus10037428.BGIv1.0 annot-version=v1.0 MAASDSNRSISAALLLLLLYVVNLAAVVRGDKSEQTVVVKKVKGKKYCTKGWECKTPSVYCCNQTISDIFQVYQFEELFAKRNSPVAHAVGFWDYQSLII ASSLYQHLGFCTTGGKLMQMKELAAFLGHVGAKTSCGYGVATGGITAWGLCYNREMSPSQSYCDDYYKDTYPCAPGADYYGRGAIPIYWNYNYGAVGEAI KEDLLNHPEYIEQNATLAFQAAIWRWMTPIKKSQPSAHDVFVGKWKPTKNDTLSKRVPGFGSTMNILYGDNVCGQGVIDDMNSIISHYLYYLDLMGVGRE DAGSHDILTCEDQALFNPRKANPSQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	0	1
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	2.0	0.8893
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	5.5	0.8330
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	5.7	0.8560
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	8.1	0.8162
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	8.7	0.8125
AT5G38110		SGA1, SGA01, AS...	anti- silencing function 1b (....		Lus10033579 [exp]	9.5	0.8238
AT2G25270			unknown protein		Lus10001945 [exp]	11.7	0.8572
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Lus10022248 [exp]	12.2	0.7910
AT3G53540			unknown protein		Lus10025296 [exp]	13.4	0.8332
AT1G72040			P-loop containing nucleoside t...		Lus10016950 [exp]	14.2	0.8291

Compare expression of checked genes

Lus10037428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.