Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36250 416 / 3e-133 Protein phosphatase 2C family protein (.1) AT3G02750 399 / 2e-126 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 393 / 5e-124 Protein phosphatase 2C family protein (.1) AT1G79630 376 / 2e-117 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 355 / 4e-110 Protein phosphatase 2C family protein (.1) AT4G03415 345 / 1e-106 Protein phosphatase 2C family protein (.1.2) AT5G01700 310 / 1e-95 Protein phosphatase 2C family protein (.1.2) AT5G27930 301 / 7e-92 Protein phosphatase 2C family protein (.1.2) AT3G05640 298 / 1e-90 Protein phosphatase 2C family protein (.1.2) AT3G16800 260 / 2e-77 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041277 [exp] 1338 / 0 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10022588 [exp] 552 / 0 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 539 / 4e-180 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10000402 [exp] 399 / 1e-125 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 396 / 7e-125 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 366 / 4e-114 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10018570 [exp] 366 / 6e-114 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 360 / 3e-112 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 355 / 5e-110 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G018100 [exp] 829 / 0 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.001G220100 [exp] 798 / 0 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.019G054200 [exp] 447 / 5e-144 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 426 / 2e-136 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 407 / 7e-129 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 402 / 6e-127 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.013G144100 [exp] 366 / 3e-114 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.019G103100 [exp] 365 / 1e-113 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 317 / 6e-96 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 312 / 2e-94 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10037431 pacid=23152286 polypeptide=Lus10037431 locus=Lus10037431.g ID=Lus10037431.BGIv1.0 annot-version=v1.0 ATGACGATGAAGAGGAGCGATTCGAAGCTGGAAGTATTGTTGCATAGGGTACCTGGGAGATTGTTCTTAAACAGCTCTTCGGATTGTGCTTCTCTCTTTA CTAAGCCTGGGAAGAAAGGGGTTAATCAGGATGCCATGATTTTTTGGGAGAATTTTGGTCCAAATGAAGACACGATATTCTGTGGTATTTTTGATGGGCA TGGTCCAAGTGGTCATCTTGTTTCAAAGAAAGTGAGGGACTCTCTGCCCTTAAAATTGAAAGCACATTGGGAACCAGATTCTAGCAACAGTGAGCTGGGT AGTATGAGTGGTAATAGTATCGGAAGGACAGCATTAGCAGAGTTTTCACTCAACTCATTTCATTTGGAACCAGTGGAGAACTTGGATCATGATAAAAAGA AAATGCAGACTGACATTTTTTTGGCATTTAAAGCCACATTTTTGAAGGCCTTCAAGGCTATGGACAAGGAACTGCAATCTCATCCTTATATCGATTGCTT CTGCAGTGGGACAACAGCGGTAACCATGATCAAGCAGGGGCAGGATCTTGTTATTGGAAATATTGGAGACTCAAGAGCTGTGTTGGGTACAAGAGATAAA AGCAGCACCCTCATTGCAGTGCAGTTGACTGAAGATCTCAAACCGTCACTTCCAAGAGAAGCAGAGAGGATTAAGCAATGCAAGGGGCGGGTTTTCGCTC TTCCAAATGAACTAGACATTGCTAGAATTTGGCTGCCGAACAGCAACTCCCCTGGTCTCGCCATGACCCGAGCATTTGGTGATTTCTGTCTGAAAAACTT CGGCTTGATCTCGGTTCCTGAGGTCTCTTACCATCGTATCACAGACAAGGATGAGTTTGTAGTGTTGGCTACTGATGGGGTATGGGATGTTTTGTCAAAT GACGAGGTTGTCAGCATAGTAGGTGCGGCCTCACCTTCAAGTGCAGCTCAAACCGTGGTCGAAATCGCTAATCGGGCTTGGAGGACCAAGTACCCGACAT CAAAGACAGACGACTGTGCCGCTGTCTGCCTATTCCTCGGCTCCGAGAAGCCACCTTTTGAAGGCGCTTTCCAATTGTTCTTGTACTCGGTGCAATTTTG TGGAGCTGCTGCGGCTGGGAGAGAGATAGAAGAGAAGAGAGGAGAAGAGAAGAGAAGAGAAACCCTTGAAGTAAGTGAGCTGGAAATAGCCCAGAACGGT TTCTTCCTCTTCCGTATTAATAGTTCTGCTTTCGTACCTTCTTCTCCGCAATTTGCTGCACACTGCACTCTTTCATCTATCAAATCATATCTCTCTCAGT TTCCAGGTTTCGATCAGCTGACTCTTCTTCCGAGGGTGGCGGCGGCGGCCTCGATGGGGATGGTGGACAATGACAAGACTGGTGGGGGGGGTAGTAGTGG TGGGGGTGATCAGAAGAACGAGGAGATGGTGGTGGCCGTGGTGACGACGAGTAATGAGCCGCCGCCGAAGTCGCCGTGGAAGAAGCCGACTACGGTGGCT GATGCTCCGGTGATGAGTGCTGCTAATGATGAGTCATGGCCTGCTCTCGCTGACGCTGGGCAACAGCATCATCAACAGCGCTCTAAGAATCTCGATGCCG GTAGTGCTAAATCAGTGGCGAATACTGAAGTGATTGCTCCTCCAATCACTGAACAACGACACCAACACCAGGGATCTTCAGGGCAACCAAAGCCACATAG CGGACATCCTAACTCCGTGCATAGGTACCCGAGGCATCCGAAATCAGGGCCTAAGCGGAATCCAAATGCTCCACCTCCTTTCCCTGGACCATTACCTTAC CAGCAACCAATGATGCCACAAGTCTTTCATGCTGTAGTACCTCCGCCTTACATTGCTGTTCCTAGTCATGCATACCAACCTGGACCTACACCTTTTCCCA CTGTTGAACCTCACTTGGTAAAGCCTGGATCCGAAACGGCCCCAATTCAACCTTTCGCTACACCAGTTAACGTCCAGCCTCCAATACGGGGTGAATCCGA TGGTAGCCTTCCGAATTTTCCGAATAAAAGACCTAATGTGCAAGAGTCCGGTGGCCATACATGGCATCAACGACCGTTCAATCCCAGAGACAATGTTCCT ATGCACCAGGGGCCAAGGCCTATGCTCAGACCTCATTTTTTCCCTCCAGGTCCAGGCTACATGGTTGGTCCAGCCTTTCCTGGTACAGCGGTGTATAGTA TGCCTATGGTTCCACCAGGCGGATTTAGGGGGCCTCATCCGCCCCATTTAATTCCATTTCCTGTCAATCCAGGAGATCATATGCTCCCTCCAGAGACAAT AACATTGAAATTTAACGTAATAAGACAAGTAGATGATGAAAATCTGCAAACTGACAGTTATCTTGTCTCCTTGATGGATGAACAAGGATGGGTTCCGATA TCAACCATTGCCGACTTTAAGAGACTTAAAAGGATGACTACAGATACAAAATTTATAATTGATGCACTACAAAGTTCTAATGCAGTGGAAGTCCAGGCTG ACAAAGTTCGGAAACGTGATGGCTGGTCAAAGTGGATTCCTGTTTCAAATGAGCAGGTAAAGAACTTAAAAGATCTGCCCTCTGAAGGTCCTGAAAACCT ACCAGATGCTACTGATTTGGAGGAGAAGCAAGAATTTGGGAATAGAAGTATGGATTCTGCTGCACATTTCTCTACTGGAAGTGAGCGTCCAATTCTGGAT GGTTCTGAAGAGAAGGAAAAGCCAATGTCATTGCAAGTTGATGTGCAGAATCTCGATGATCTGTCTAATGATTTTGCAAGCACATTTATGCTTGACGAGG AGCTGGAGCTTGAGCAGAAAATGCTGAAAAGTGACTGCATTTCTCCGCGTAGGAGAGTCGTAGATGATGATGATGATGAAGAGGTGATGGTCAATGATCA GGATGTTCACAGACTAGTAATTGTCACTCAGAATACTATCATAAATGGAGAATCAAAGTCGGGCGGTTCAGATTCCAAACGCATCTCAAATGAGCTTGCT TCTGCAATAAACGACGGTCTCTATTTCTATGAACAGGAGCTCAAAGCTAAGCGTAGCAATCGTAGAAAGAATAGCTACGAGCCCAGAGATGGGAACTTGA GGTCTACAAATAATGCTCCAGGAATATCTAATTCTAGGGCTAGTGAAAGTCCTAGAGGTAATTCCCACGAGGAATCTCAAAGCGCTAATAGTATTAGGAA ACAGAATAGGAATACATCGAAGCAACATTTGTCTCATAAGCAAAGATTCTTCTCCAGCAACTTCAGGAATCATGGCGCTGGACGTAAATCAATAGGGGCA ATATCAGAAAGTCCACCAAGTAAATCAGTTGGGTTTTTCTTTAGTTCTACTCCTCCTGAGAACCCAAGCATTAGATCTTCGAAGTTAAGTGTTTCACCTC ACAGCAATCTTTCAGGGAGTAGCCCACCAGTTGGGTGCACTCCAAAGTCATTACCTCTATTTCAACATCCGAGTCATCAGCTTTTGGAAGAAAATGGTTT TAAGCAGCAGAAGTACATGAAATATCACAAGCGTTGCCTAAATGACAGGAAAAAGTTGGGTGTTGGTTGCAGTGAGGAAATGAACACACTGTACAGGTTT TGGTCATTTTTCCTCAGGGACATGTTTGTCCTTTCAATGTACAACGAGTTCCGTAAACTGGCACTAGAGGATGCTGATGCGAATTACAACTACGGGATGG AATGCCTTTTCCGGTTCTATAGTTATGGGTTGGAGAAGAAGTTTGTGGAGGAGTTATACAAGGACTTTGAAGAGCTCAGTCTTGAGTTCTACCGTCGAGG CAATCTCTATGGCCTCGAAAAATATTGGGCTTTCCACCATTATCGTGGCAGCAAAGAGGCACTTAGGAAAGACCCTGAACTCGATAAATTGCTGAAAGAA GAGTATCGTAGTTTGGAAGACTTCCGAGCCAAGGAGAGGGCCACCGGTGCGCCACAATGA
AA sequence Show only first row Show all	>Lus10037431 pacid=23152286 polypeptide=Lus10037431 locus=Lus10037431.g ID=Lus10037431.BGIv1.0 annot-version=v1.0 MTMKRSDSKLEVLLHRVPGRLFLNSSSDCASLFTKPGKKGVNQDAMIFWENFGPNEDTIFCGIFDGHGPSGHLVSKKVRDSLPLKLKAHWEPDSSNSELG SMSGNSIGRTALAEFSLNSFHLEPVENLDHDKKKMQTDIFLAFKATFLKAFKAMDKELQSHPYIDCFCSGTTAVTMIKQGQDLVIGNIGDSRAVLGTRDK SSTLIAVQLTEDLKPSLPREAERIKQCKGRVFALPNELDIARIWLPNSNSPGLAMTRAFGDFCLKNFGLISVPEVSYHRITDKDEFVVLATDGVWDVLSN DEVVSIVGAASPSSAAQTVVEIANRAWRTKYPTSKTDDCAAVCLFLGSEKPPFEGAFQLFLYSVQFCGAAAAGREIEEKRGEEKRRETLEVSELEIAQNG FFLFRINSSAFVPSSPQFAAHCTLSSIKSYLSQFPGFDQLTLLPRVAAAASMGMVDNDKTGGGGSSGGGDQKNEEMVVAVVTTSNEPPPKSPWKKPTTVA DAPVMSAANDESWPALADAGQQHHQQRSKNLDAGSAKSVANTEVIAPPITEQRHQHQGSSGQPKPHSGHPNSVHRYPRHPKSGPKRNPNAPPPFPGPLPY QQPMMPQVFHAVVPPPYIAVPSHAYQPGPTPFPTVEPHLVKPGSETAPIQPFATPVNVQPPIRGESDGSLPNFPNKRPNVQESGGHTWHQRPFNPRDNVP MHQGPRPMLRPHFFPPGPGYMVGPAFPGTAVYSMPMVPPGGFRGPHPPHLIPFPVNPGDHMLPPETITLKFNVIRQVDDENLQTDSYLVSLMDEQGWVPI STIADFKRLKRMTTDTKFIIDALQSSNAVEVQADKVRKRDGWSKWIPVSNEQVKNLKDLPSEGPENLPDATDLEEKQEFGNRSMDSAAHFSTGSERPILD GSEEKEKPMSLQVDVQNLDDLSNDFASTFMLDEELELEQKMLKSDCISPRRRVVDDDDDEEVMVNDQDVHRLVIVTQNTIINGESKSGGSDSKRISNELA SAINDGLYFYEQELKAKRSNRRKNSYEPRDGNLRSTNNAPGISNSRASESPRGNSHEESQSANSIRKQNRNTSKQHLSHKQRFFSSNFRNHGAGRKSIGA ISESPPSKSVGFFFSSTPPENPSIRSSKLSVSPHSNLSGSSPPVGCTPKSLPLFQHPSHQLLEENGFKQQKYMKYHKRCLNDRKKLGVGCSEEMNTLYRF WSFFLRDMFVLSMYNEFRKLALEDADANYNYGMECLFRFYSYGLEKKFVEELYKDFEELSLEFYRRGNLYGLEKYWAFHHYRGSKEALRKDPELDKLLKE EYRSLEDFRAKERATGAPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	0	1
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10024952 [exp]	2.2	0.8214
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	3.5	0.8191
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	6.7	0.7836
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	6.9	0.8088
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	7.7	0.8121
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	8.9	0.7791
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	13.6	0.7848
AT2G05710		ACO3	aconitase 3 (.1)		Lus10015116 [exp]	15.9	0.7531
AT3G19780			unknown protein		Lus10040970 [exp]	16.9	0.7715
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	18.5	0.7206

Compare expression of checked genes

Lus10037431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.