Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66560 714 / 0 Phototropic-responsive NPH3 family protein (.1) AT3G50840 574 / 0 Phototropic-responsive NPH3 family protein (.1) AT1G30440 526 / 3e-180 Phototropic-responsive NPH3 family protein (.1) AT5G03250 445 / 2e-149 Phototropic-responsive NPH3 family protein (.1) AT5G13600 437 / 2e-146 Phototropic-responsive NPH3 family protein (.1) AT3G44820 418 / 3e-138 Phototropic-responsive NPH3 family protein (.1) AT5G64330 361 / 4e-115 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G48800 350 / 1e-112 Phototropic-responsive NPH3 family protein (.1) AT5G67385 346 / 5e-111 Phototropic-responsive NPH3 family protein (.1) AT3G08660 322 / 1e-101 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041276 [exp] 1090 / 0 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 509 / 2e-173 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 506 / 1e-172 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 432 / 1e-143 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023523 [exp] 426 / 5e-141 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 422 / 6e-140 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 418 / 2e-138 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 417 / 4e-138 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 410 / 8e-135 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G033900 [exp] 791 / 0 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G130700 [exp] 786 / 0 AT5G66560 733 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 527 / 0 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 514 / 9e-176 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 464 / 2e-156 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.008G038600 [exp] 461 / 6e-155 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 457 / 9e-154 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 442 / 9e-148 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 438 / 3e-146 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 374 / 1e-120 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10037432 pacid=23152391 polypeptide=Lus10037432 locus=Lus10037432.g ID=Lus10037432.BGIv1.0 annot-version=v1.0 ATGGCTGACAAAGGAAAACCCTCCAAGGGCCAAGCCTGGTTCTGTTCAGCTGGGATGCCCAGTGACATTGTAATCGAGGTTGATGATATGAGCTTCCATC TCCAGAAGCGGCCTTTGATGGCGAAAAGTGGAATGCTTCGTCAGTTGATAACGGAGCAAGAGACAAACACTACCTCTGCCGCTACACTCCAAACTTGCAC TGAAGACCAAGGCGGCGGCGGCGGCTACGACGACGAAATCGAAGAGGTTGAATGTCAGATTTCCCTCCCGGATTTCCCGGGCGGTTCCGAGACTTTCGAA ATGGTGGCCAAGTTCTGCTACGGGGTGAAAGTAGATATCTCTTCCTCCACCGTCGCCCAACTCCGCTGCGCTGCGGAGGTTCTGGAGATGACGGAGGAGT ACTCGGAAGACAATTTGATCTCCAGGACTGAGAGGTTCTTTTCTCACTCTGTTCTCAAGAGTCTCAAGGAATCCATCAAAGCGTTGAAATCTTGCGAGGG AGTTATGCCTGTTGCTGAAACCCTAGGCATTCCTCACCGCTGCATTGAATCCCTAGCCTCCAGAGCTTCCGCTGCTGATCCGGCTCTGTTTGGCTGGCCA GTCACTGAAGGCGAGAACAGCAGAGATGGCTCTAATCAAGCTCTGTGGAACGGAATCGAGTCAGCTGTGCGGAGGAAAGGATCTGCCGCTCCTGTCAATT CATGGTGGTTGGAAGATCTTGCTCTTCTAAGCTTGCCCATGTTTAATCGGGTGATTTCTACTATGAAGGAGAGAGATCTGAGTCCAGAGATTGTCGAGAG CTGCTTAATCTACTACGCTAGGAGGCATATTCCAGGGATCTCGAGACATAGTGGAAAACCGCCGCCGACGGCGACATCTAGCACCATCGCTGGCTCAGAG GGGGAGCAGAGAGAAGCACTGGAGTCAATCGTGTCCAATCTCCCACTAGAAAAGAGCTCCAGATCTTCTTCTTCTTCTTCAACTGCAACTAGATTTATGA TCGGCTTATTGAGAACCGCCAACATACTAAGCGCATCGCAGTCGTGCCGTGCTGCATTGGAGAAGAAGATCGGCACACAGTTGGAACAAGCCACGCTAGA CGATCTTCTAATCCCGAGCTATTCCTATCTCAACGAGACTCTCTACGACGTCGATTGCGTCGAGAGAATCCTGTCCCACTTCTTGGACGGACTCGATAAT GCGGACGATCCGGCCAATGAAAGAGTTCCGCCCGGGTTGATGCTGGTCGGAAAACTGATCGACGGCTACCTGGCCGAGATTGCATCCGATGCTAATTTAA AGCCAGAGAGATTCTACAAGCTGGCCATCTCGTTGCCGGAAAAGGCGAGACTTTTTGACGACGGTCTATACAGAGCCGTAGACGTCTATCTCAAGGCGCA TCCATGGACATCGGAGACGGAGAGGGAGAAGATATGTGGAGTAATGGAGTGCCAGAAGCTGACGCTAGAAGCATGTACACACGCAGCGCAGAACGAACGG CTTCCTCTACGAGCGGTGGTGCAGGTTCTCTTCTTCGAGCAGCTACAGCTCCACCACGCCATTGCTGGGACGCTACAAGGGAGACGGGAAGAGGTGGAGG AGTTGGAGGAAGGAGAAGCGGTGGTTAGAGCAGACGGTAACGACGTAAACGGAAAGTGGAGGGAGAATCAGGTGCTCCGGCTTGACATGGATAGCATGAG GACGCGGGTGCAGCAGCTGGAGAAGGAGTGTTCCAGTATGAAGAAGGTGATCCAGAAGATAGGCAAGGACGACGGAGGAGGAGGAGCTGTTGATAACGGC GTTAAACCTGGGTGGAGAGGGTCGTCGTCGTCGTTGACCAAGAAGTTCGGGTGTAAGTTGAAGACTCAGGTGTGCGATTCTCACCAACAGGTGGTTGTAG GACCCAGGAAAGGGCGGCAACACCATCACCAAGACTAG
AA sequence Show only first row Show all	>Lus10037432 pacid=23152391 polypeptide=Lus10037432 locus=Lus10037432.g ID=Lus10037432.BGIv1.0 annot-version=v1.0 MADKGKPSKGQAWFCSAGMPSDIVIEVDDMSFHLQKRPLMAKSGMLRQLITEQETNTTSAATLQTCTEDQGGGGGYDDEIEEVECQISLPDFPGGSETFE MVAKFCYGVKVDISSSTVAQLRCAAEVLEMTEEYSEDNLISRTERFFSHSVLKSLKESIKALKSCEGVMPVAETLGIPHRCIESLASRASAADPALFGWP VTEGENSRDGSNQALWNGIESAVRRKGSAAPVNSWWLEDLALLSLPMFNRVISTMKERDLSPEIVESCLIYYARRHIPGISRHSGKPPPTATSSTIAGSE GEQREALESIVSNLPLEKSSRSSSSSSTATRFMIGLLRTANILSASQSCRAALEKKIGTQLEQATLDDLLIPSYSYLNETLYDVDCVERILSHFLDGLDN ADDPANERVPPGLMLVGKLIDGYLAEIASDANLKPERFYKLAISLPEKARLFDDGLYRAVDVYLKAHPWTSETEREKICGVMECQKLTLEACTHAAQNER LPLRAVVQVLFFEQLQLHHAIAGTLQGRREEVEELEEGEAVVRADGNDVNGKWRENQVLRLDMDSMRTRVQQLEKECSSMKKVIQKIGKDDGGGGAVDNG VKPGWRGSSSSLTKKFGCKLKTQVCDSHQQVVVGPRKGRQHHHQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10037432 [exp]	0	1
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10041573 [exp]	5.3	0.8819
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	12.2	0.8423
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	13.7	0.8567
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	16.9	0.8560
AT2G05920			Subtilase family protein (.1)		Lus10033431 [exp]	18.7	0.8377
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10011189 [exp]	19.5	0.8237
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	26.3	0.8129
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	26.5	0.8321
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	27.1	0.8259
AT5G48240			unknown protein		Lus10041095 [exp]	27.4	0.8388

Compare expression of checked genes

Lus10037432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.