Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATMG00560 190 / 3e-57 ATMG00560.1, RPL2 Nucleic acid-binding, OB-fold-like protein (.1) AT2G07715 189 / 2e-56 Nucleic acid-binding, OB-fold-like protein (.1) ATCG01310 63 / 6e-11 ATCG01310.1, RPL2.2 ribosomal protein L2 (.1) ATCG00830 63 / 6e-11 ATCG00830.1, RPL2.1 ribosomal protein L2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G136466 [exp] 62 / 8e-12 ATCG01310 253 / 2e-86 ribosomal protein L2 (.1) Potri.011G074401 [exp] 61 / 3e-10 ATCG01310 376 / 2e-131 ribosomal protein L2 (.1) Potri.005G154300 [exp] 58 / 3e-10 ATCG01310 246 / 6e-84 ribosomal protein L2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00181 [flax] [poplar] Ribosomal_L2 Ribosomal Proteins L2, RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10037433 pacid=23152359 polypeptide=Lus10037433 locus=Lus10037433.g ID=Lus10037433.BGIv1.0 annot-version=v1.0 ATGAATAATCATGATTGCTTGATTCGTTCAAGTAAATCACCACGAGTCATCTTACTTCAAATAAATACGTGGGCTTCGTTAAGTCCGGCCCCATGCGGAA TGCTGCGTAGTGATCCGACAGTCCAACTTGAAGAAGATCGTAACTGCGATCTGTATAGGGTTTCTGGTCTCTCTGAAGAGCTGATCGAGGCTTGCATTCG CGGATTGGAAGCATTCACCTCTCAGTACTCCGCTTACACTCCCACAGGCAGGGAGCTTGCGCAAATGGCCACCACATTGACAAAGAGGGTTGGTAATGCT CTTGCTGGTCATGTCGGCAGATATAGGATTCCGCCGTGGCAGTTACTGGATAGAATTGGTGGTGTACGATCCTTAGCAACAACTACTGTTAAAGCTGCAA AAGCTGGAACCAGAGGCGGTGCTCCAGTAGTAAAAATAAAGGAAGCGCACAGGGCCTTGACTGTAAATGTGGGGAAAACTGCCGGCAGAAACTCAGCAGG ACGCATTACCTCCTATCATCGAGGAGGTGGAGCAAAGCGTTTGCACAGAAGAATTGATATCAAACGGGACACGTCATCAATCGGTGTCGTCGAAAGGATA GAATACGATCCCAATAGATCCTCCCGCATTGCCCTTGTTCGATGGGTTGAGGGTGGCCGGTACTCTGCACCGAAATTCAAGGAGCCAAAAGAGCCTCTAT ATCAGTACGGGACTGCTGAACCAGTCGCAACTACCACACAAGCAAAATATACACTCTCTTCCATGGCGAGAAATGTTGATCAAAGAACAGTAGCATACTG CTCGCCTGTAAGAGCTACTTCTTTGGTGGTCGGGAATTCTGCATCAACACCTTCTCTGAACGGCACGTCTATACAGAAAACTAGTGTCAGAGACGTCTTT TTAACGGCCTTCTCCCGAAACCGAAAGGCAAGAGTTGAATCTATTCCCTCTGAGAGCTGCCGTGGTCTTCCACGGATTGCAGTAGTTGGAGCCCAGCCGA AATTCTTTGCTCCACAATCAAGAGAGGAATCCGAGGGGAAGACCGAGTTTGCCAGTTTTGAGATCAAGAAGTACAACAAGCAGAGCAGTACTTGGGAGAA CAGACTCAAGCGCAAAGCAGCTATTCCCTGGCTGAGCTGTACGCTATGA
AA sequence Show only first row Show all	>Lus10037433 pacid=23152359 polypeptide=Lus10037433 locus=Lus10037433.g ID=Lus10037433.BGIv1.0 annot-version=v1.0 MNNHDCLIRSSKSPRVILLQINTWASLSPAPCGMLRSDPTVQLEEDRNCDLYRVSGLSEELIEACIRGLEAFTSQYSAYTPTGRELAQMATTLTKRVGNA LAGHVGRYRIPPWQLLDRIGGVRSLATTTVKAAKAGTRGGAPVVKIKEAHRALTVNVGKTAGRNSAGRITSYHRGGGAKRLHRRIDIKRDTSSIGVVERI EYDPNRSSRIALVRWVEGGRYSAPKFKEPKEPLYQYGTAEPVATTTQAKYTLSSMARNVDQRTVAYCSPVRATSLVVGNSASTPSLNGTSIQKTSVRDVF LTAFSRNRKARVESIPSESCRGLPRIAVVGAQPKFFAPQSREESEGKTEFASFEIKKYNKQSSTWENRLKRKAAIPWLSCTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	0	1
AT1G08390			unknown protein		Lus10038152 [exp]	6.9	0.7646
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	6.9	0.7544
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	8.0	0.8048
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	8.1	0.7805
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10024605 [exp]	17.0	0.7655
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	18.1	0.7612
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	21.8	0.7538
					Lus10031452 [exp]	23.2	0.7690
AT1G01880			5'-3' exonuclease family prote...		Lus10036554 [exp]	27.7	0.7736
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10040296 [exp]	27.7	0.7432

Compare expression of checked genes

Lus10037433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.