Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26570 1490 / 0 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT4G24450 157 / 1e-38 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT1G10760 155 / 5e-38 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT5G01260 51 / 3e-06 Carbohydrate-binding-like fold (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041275 [exp] 2026 / 0 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10029118 [exp] 159 / 5e-39 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10032829 [exp] 155 / 6e-38 AT4G24450 1571 / 0.0 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) Lus10013044 [exp] 153 / 3e-37 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10002495 [exp] 53 / 1e-06 AT5G01260 152 / 3e-42 Carbohydrate-binding-like fold (.1.2) Lus10004826 [exp] 52 / 3e-06 AT5G01260 160 / 1e-44 Carbohydrate-binding-like fold (.1.2) Lus10035528 [exp] 52 / 3e-06 AT2G40070 280 / 4e-83 unknown protein Lus10027767 [exp] 49 / 4e-05 AT2G40070 288 / 5e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G234500 [exp] 1643 / 0 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.014G147900 [exp] 1628 / 0 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.008G188150 [exp] 164 / 1e-40 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.010G044100 [exp] 160 / 2e-39 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.016G114500 [exp] 52 / 2e-06 AT5G01260 169 / 1e-48 Carbohydrate-binding-like fold (.1.2) Potri.009G044800 [exp] 49 / 1e-05 AT5G01260 149 / 8e-42 Carbohydrate-binding-like fold (.1.2) Potri.006G099200 [exp] 45 / 0.0002 AT5G01260 156 / 8e-44 Carbohydrate-binding-like fold (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain CL0179 [flax] [poplar] ATP-grasp PF01326 [flax] [poplar] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Lus10037434 pacid=23152614 polypeptide=Lus10037434 locus=Lus10037434.g ID=Lus10037434.BGIv1.0 annot-version=v1.0 ATGGATCCTGTGTTCGGACTCCACAGTCGTTGCTCCCCATCCTCCGCCAACCTCCACCTCGCCAACAACCATTCACAATTCCTTCATTCTTCGGCGAATC GCTTCTCACGCACTCCGGGGATATCCCTTCCGCTTCACGCCCGATCCAGACATGCGCTTTTCCCGAGAATCGCTTGCCGTGTTTCTTCTCCCGAAGCCAG CGAGGAAGAGAAGATGAAACAGCTCAAGTCAAATTTGAGCCCCGGAAGAGTACAGCTTAGTATTTGTCTACGTCACCAAGTACAATTTGGGGAGCATGTA GTCATGTTAGGATCAACAAAAGAACTGGGATCGTGGAAGAAGAATGTGTCACTGAATTGGACGGAAGGTGGATGGGTATGCGATTTGGAGTTCAAAGGTG GTCAATCTGTTGAGTATAAATTTGCTGTCGTTGACAATGATAAGCGTATAGTATGGGAAGGTGGTGAGAATCGTAATTTGCAACTTCCTAAAGAGGGCAG TTATGACGTGTTGTGCCAATGGAATGCTACTAGGGAGCATATTGATTTGCTGCCTACGAGTTCAGAACAGAAACAGCATAAACGAGAGAAAATAGTCCCC GACGAAGCTAGTCCTCCCACTCATCATGATGGTGAACCAAGTCCTTTTGTTGGACAATGGCAGGGAAAGGCTGCATCATTCATGAGATCCAATGAACACG GGAACAGAGAAAGCCAAATGAAATGGGATTCTTCAGGTCTTGAGGGGTTGTCGCTGAAGCTAGTTGAAAGTGATCAAGGTGCTAGGAATTGGTGGATGAA GCTTGAAGTTGTACGGGACCTAATAGCTTCCAGTCTTGATAGTAAGGATCGTATGGATGCTCTCGTATACTCCTCTATTTATCTTAAGTGGATAAATACA GGACAAATCCAATGCTTTGAAGGCGGAGGTCATCACAGACCAAATCGCCATGCTGAGATTTCTAGGCAAATATTCAGAGAGTTGGAACGAATATCCAGTA GGAAGGACACTTCCCCACAGGAAGTGCTTGTTATACGGAAGATCCATCCATGCTTGCCATCATTTAAGGCAGAATTTACAGCTTCAGTTCCTCTAACGCG AATAAGGGATATCGCTCATCGGAATGACATCCCTCACGACCTTAAGCAAGAAATCAAACATACGATTCAGAACAAGCTTCATAGGAATGCCGGTCCAGAA GATCTAATTGCTACTGAGGCAATGCTTGCTCGAATTACCAAGAATCCTGGAGAATACAATGCGGCATTTGTGGAACAATTCAAGATTTTCCATCAGGAGC TTAAAGATTTTTTCAATGCTGGAAGTCTTGCTGAACAGCTCGAATCAATTAAAGAATCCTTTGATGATAAGGGTCTTTCTGCTCTAAGATTGTTTTTGGA CTGCAAAAAGATCTTGGATTCTAAACAGTCGACCAACATTGTTGAATTGATGGAGACCATTCAGTCTCTAAATGGTCTGAGAGATACAATTGGGAAAGGC CTTGAAAGTGGTCTTAGGAACGATGCTTCTGATGCTGCAATAGCTATGCGTCAAAAGTGGCGTTTGTGTGAGATTGGGCTCGAGGATTATTCTTTTGTAC TATTTAGCAGATTTATAAATGAACTTGAAGCAATGGGAGGAGCTAAGTGGCTTACTGACAATTCAGAATCAAAGAGTGTAAGCTCTTGGAATGACCCTCT TGCTTCACTAATTGTTGGTGTTCATCAACTGGCCTTATCTGGTTGGAAGCCTAAAGAATGTACAGCCATTGAAAATGAACTCCGGGCCTGGAAAGAGAGA GGTCTCGCTGAGAAGGAAGGAGATGAAGATGGCAGGATGATTTGGGCGCTGAGGCTTAAAGCTACTCTTGACAGAGCACGAAGATTGACCGAGGAATACT CCGACGCACTTCTTCATATATTTCCGGAAAAAGTGCAGATTTTAGGCAAAGCACTTGGAGTTCCAGAAAATAGTGTGAGGACATACACTGAAGCTGAGAT TCGAGCCGGGGTAGTTTTCCAGGTGTCCAAACTCTGTACACTGCTGTCGAAAGCTGTCAGAAGCACTCTTGGCTCCCAGGGTTGGGATGTTCTTGTTTCA GGTGCTGCTGTTGGAACGTTAATTCAGGTTGAAAGTATTTTACCAGGTTCGTTGCCTCCAAGTGCAAAAGGACCCATAATTCTTGTAGTTAACAAAGCTG ATGGGGATGAAGAGGTCACAGCTGCTGGAAGTAACATAGTGGGAGTTGTGCTCCTACAAGAGCTTCCTCACTTATCTCATCTTGGTGTTAGGGCCCGCCA AGAAAAAGTTACCTTTGTAACTTGTGAAGATGAAGACAGAGTTGCTGATATAAAAATGCTTGTTGGGAAGCTTGTCAGGCTGGAAGCATCTTCAAGTGCG GTAAATCTAAACCTGACTTCATCAAATGATATTCCCGTCAATGAGACAGTTGTAGTTAAAAAACAAGAGCTTCAAGATCCTCCTCCACTTGCTGGTAAAG CCCCTTCAGCAAACCAGGGTGCATCTTCCGGGGGTGTGATATTGCTTGCTGATGCAGACCCTCTAACTTCAGGCGCAAAAGCAGCTTCCTGTGGCCGTTT GGCTTCTTTGGCTGCAGTTTCGAGTAATGTCTCTAATGACAAACAGGTGTCAGCTTCATTTCAAGTCCCTAAAGGTTTAGTTATCCCTTTCGGCTCAATG GAACTGGCACTGGAGCAATCTAAATCAACGGAAACATTCAAGTCACTCATAGAACAGATCGAAGGAGCAACGATGGAAAGCGGTGCACTCGACAAACTCT GCTCTCAACTCCAGGAGTTGATTTGCTCGCTGCAACCGCCAAAGGATGTCTTGGATTCCGTTACCCAAGTATTTCCAGGAAACCCTCGTTTAATAGTACG TTCAAGTGCCAATGTCGAGGACTTAGCTGGGATGTCTGCTGCCGGACTCTACGACTCTATTCCCAATGTGAGTCCATCAAACGCAGCCGTCTTCGGTAGT GCAGTTAGCCGAGTTTGGGGTTCCTTATACACCAGGAGAGCGGTCCTGAGCCGGAGAGCTGCTGGGGTGTCTCAGAAGGAAGCCACCATGGCCGTTCTGG TACAAGAAATGCTATCGCCGGACCTCTCGTTCGTACTCCACACGCTCAGCCCGACTGATAACGAAAGCAACTTGGTGGAGGCCGAGATTGCTTCGGGACT CGGAGAGACCTTAGCGTCGGGCACCAGGGGCACTCCGTGGCGAATTTGTTCAGGGAAGTTGGATGCATCGGTGAAGACATTAGCGTTTGCAAACTTCAGC GAGGAAATGGTTGTTTCGGGTGGGTCGGCTGCGGATGGTAAAGTGCGCCATTTAACTGTGGACTACAGCAAGAAGGGATTGACGGTTGATTTGGGGATCC GGAACCAGATCGGTCAGCGGCTTGGTGCGATCGGTTTCTACCTGGAGCGTGAGTTCGGGTGCCCGCAGGACGTGGAAGGATGCATGGTTGGAGAAGAGGT GTATATAGTTCAAACACGGCCGCAGCCTCACTAG
AA sequence Show only first row Show all	>Lus10037434 pacid=23152614 polypeptide=Lus10037434 locus=Lus10037434.g ID=Lus10037434.BGIv1.0 annot-version=v1.0 MDPVFGLHSRCSPSSANLHLANNHSQFLHSSANRFSRTPGISLPLHARSRHALFPRIACRVSSPEASEEEKMKQLKSNLSPGRVQLSICLRHQVQFGEHV VMLGSTKELGSWKKNVSLNWTEGGWVCDLEFKGGQSVEYKFAVVDNDKRIVWEGGENRNLQLPKEGSYDVLCQWNATREHIDLLPTSSEQKQHKREKIVP DEASPPTHHDGEPSPFVGQWQGKAASFMRSNEHGNRESQMKWDSSGLEGLSLKLVESDQGARNWWMKLEVVRDLIASSLDSKDRMDALVYSSIYLKWINT GQIQCFEGGGHHRPNRHAEISRQIFRELERISSRKDTSPQEVLVIRKIHPCLPSFKAEFTASVPLTRIRDIAHRNDIPHDLKQEIKHTIQNKLHRNAGPE DLIATEAMLARITKNPGEYNAAFVEQFKIFHQELKDFFNAGSLAEQLESIKESFDDKGLSALRLFLDCKKILDSKQSTNIVELMETIQSLNGLRDTIGKG LESGLRNDASDAAIAMRQKWRLCEIGLEDYSFVLFSRFINELEAMGGAKWLTDNSESKSVSSWNDPLASLIVGVHQLALSGWKPKECTAIENELRAWKER GLAEKEGDEDGRMIWALRLKATLDRARRLTEEYSDALLHIFPEKVQILGKALGVPENSVRTYTEAEIRAGVVFQVSKLCTLLSKAVRSTLGSQGWDVLVS GAAVGTLIQVESILPGSLPPSAKGPIILVVNKADGDEEVTAAGSNIVGVVLLQELPHLSHLGVRARQEKVTFVTCEDEDRVADIKMLVGKLVRLEASSSA VNLNLTSSNDIPVNETVVVKKQELQDPPPLAGKAPSANQGASSGGVILLADADPLTSGAKAASCGRLASLAAVSSNVSNDKQVSASFQVPKGLVIPFGSM ELALEQSKSTETFKSLIEQIEGATMESGALDKLCSQLQELICSLQPPKDVLDSVTQVFPGNPRLIVRSSANVEDLAGMSAAGLYDSIPNVSPSNAAVFGS AVSRVWGSLYTRRAVLSRRAAGVSQKEATMAVLVQEMLSPDLSFVLHTLSPTDNESNLVEAEIASGLGETLASGTRGTPWRICSGKLDASVKTLAFANFS EEMVVSGGSAADGKVRHLTVDYSKKGLTVDLGIRNQIGQRLGAIGFYLEREFGCPQDVEGCMVGEEVYIVQTRPQPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	0	1
AT5G58970		ATUCP2	uncoupling protein 2 (.1.2)		Lus10016445 [exp]	2.4	0.8919
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	2.6	0.9097
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	2.8	0.9089
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	3.5	0.8770
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	3.5	0.9063
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10039829 [exp]	3.9	0.8747
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	4.0	0.9039
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10037943 [exp]	6.0	0.8675
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	7.1	0.8925
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10021329 [exp]	8.1	0.8777

Compare expression of checked genes

Lus10037434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.