Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64420 446 / 1e-135 DNA polymerase V family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041274 [exp] 1283 / 0 AT5G64420 1208 / 0.0 DNA polymerase V family (.1) Lus10018176 [exp] 985 / 0 AT5G64420 351 / 3e-104 DNA polymerase V family (.1) Lus10025659 [exp] 727 / 0 AT5G64420 1206 / 0.0 DNA polymerase V family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079900 [exp] 540 / 1e-170 AT5G64420 958 / 0.0 DNA polymerase V family (.1) Potri.001G285600 [exp] 537 / 2e-169 AT5G64420 952 / 0.0 DNA polymerase V family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04931 [flax] [poplar] DNA_pol_phi DNA polymerase phi
Representative CDS sequence Show only first row Show all	>Lus10037435 pacid=23152317 polypeptide=Lus10037435 locus=Lus10037435.g ID=Lus10037435.BGIv1.0 annot-version=v1.0 ATGGCAAGCAATAAAAGAAATTCTAATTCAGTGGAGAAAGTTGAAGAGGTGGTAGAAGGTGAAATTCAACTCGCCAATCCTATCACGAAGAAGATGAAGA AGGAACATAAGTCCAAGGATGCTGGTAATGTGGATCCTACTGCTCGTTCTGAAACCGATACAGTCAAACCCATGGAAAGAAAGAAACTAAGGAAAAATTT GGACAAGGTGCGTCACCGCGGCCCGGAGAAGAATGAACAAGAAAAGCCAAAACCAATGGATGTGGATTCCAAAGTTGATGAAACCAAGAGGGGGAAAATG GTAGCTTCATCTAGTAACGTGCCTGCTTTCCATATTGATGTTTTCAAGGAGTTGGCATCTGCTGATGCTTCTGTAAGAGAAGCTGGTGTTGAAAGACTAG TAACCGAGCTGCAGAAGGTTCAGAATGCTTATGAAGGCAATAAGGAGTTGTATGAAAGTGGGTTGAAATTGGAAGCTGATAAGGATGATGGCTTGAATGA TACTGCACCTTCCGTCAGATATGCTATTAGGAGACTCGTCCGTGGTGCTTCATCATCTAGGGAGTGTGCCAGACAGGGTTATGCATTGGGGTTGTCTCTG TTGGTTTGCACAATCTCTTCCATCAAAGTTGATTCCATGCTGAAATTAATTCTTGAGATATTAGAAGTTTCTGCATCAATGAGGGGCCAGGAACTAAAGG ATTGTCTTTTAGGTAGATTATTTTCATACGGCGCTCTTGCTCGATCAGGAAGGCTGAATGAATTGTGTATTTCAGACCCAAACACTCCAGTTATCAAGGA GTTTGTCAGTGTTCTTCTCACTCTTGCCGCAAAGAAATCTTATTTGCCAGAGCCTGTTGTTACAGTTATCTTGGACTTGGCCGAGAAGTTGCAAGTGGAG CAGATATTGAACCATGTACTTGAAGCTCCTGGACTTTCTGAGTGGTTTAATGATGCTGTGGATGCTGGGAACCCGGATGCTTTACTTCTAGCTTTGAACC TGCGGGAGAAAGTTTCAGTTGACAGCTTAAAGTTTGGAACAGTTCTGCCATATCCATTCAGCCCTAGCAGCTTCTTTTCCTCTGAGCATTTGAATTTACT TAAGAACTGCTGGAAGAACTCAACTTCCTGCCAACCTCGAGTACACAGCGTGTGGCCCGTTCTTGTAAACATACTTTTGCCTCATTTGGCGCTGGATGTT TTGCTCCTCCTCCTTCCAAGACTGCCTGCATCCTTGGTACCTGTGGTTCTCTCTGACAAACTTGTGCAAGGTCTGATGGATATTCTTTCAACAAAGGATA ACTGGCTCTATAAAGTTGCACAACATTTTATTAAAGAATTATCAGATTGGGTTGGTAATGATGATGTCAGAAGGGTTGCAGTTATTGTTTCCTTACAGAA ACACAGCAATGGGAAATTCGATTCCATAACAAAGACAAAAACAGTAAAAGCTTTGTTGGCTGAGTTCAAGACAGAATCTGGTTGCCTGTTATTCATCCAA AATTTGGTCAACTTGTTTGTTGATGAGAGCAATGCTTCAGATGAACCTTCAGACCAAAGCCAGACAACTGATGAAAATTCAGAGATGGGATTGCTAGAGG ATAAAGATTCTGGTGTATTGGGAAATTCTGACTCCTTGAAGAGTTGGATTGCGGAATCATTGCCAAGTATTTTGAAATTTTTGAAGTTGGATCCTGAAGA AAAGTTACGTGTCCAAAAGGAAATCTTGAAGTTCCTAACCGTTCAAGGTTTGTTCTCTGCATCTCTTGGCTCTGAAGTCACGTCATTTGAACTTCAAGAG ACATTTACGTGGCCAAAGGCAGCAACTTCAAGTGCTATCTGCAAAATCTGCATTGAGCAAATCCAATCATTGCTGGCAAGTGCTCAAAAGATGGAGTCGT CTCCTGCTTTGCTGAATGGCTCCGAGGCTAGTGATCTTGGGTCTTTCTTCATGCAGTTCCTTTCAACGTTGCGTAGCATACCGTCTGTTTCTCTATTCCG AAATTTAAATGATGAGGATGAGAAGGCATACCAAAAGTTACTGGTAACGGAAGCTAGTCTTCACAAACAGGAAACAAAAGACATGTCTGAGAACGTTACT TACAAGTACCATGCGCTGAGATACTTGATGATCCAGTTATTGCTCCAAGTGCTCCTTCGTCCAGGAGAATTCAATGAACCTGTGTTTGAAATCATCATAT GTTGCAAAAAAGCCTACCAACTTGCTGACATTCCTGACCAGGAGGAAGATGAGTCTGATGGCGATACTGAGTGGATGGATGTTCTTGTGGACACATTAAT TTCACTACTACCACAGTCATCTGCCCCTGTACGGACCTCCATTGAGCAGGTGTTCAAATGTTTCTCCTCAGACGTGACAATGGATGGATTACTGCAGATG CTGCGCATCATCAAGAAAGACTTGAAGCCATCTAGACATCGGGAAGCAGATAGTGAAAATGATGATGATGCCGACGATGATGATCTTCTTGACATAGAAG AAGACGAAGATGATGAAATTGATCAAGCCGGAACTGGTGAAACTGGTGAGAGTGAAGAACAGACCGATGACTCTGAGGCGGTCTTGGAAGCAGATGGAGA TGAGAAAGAATCGCCTGAAGATTCTGATGATGAGTCTGATGAAGGAATGGATGATGATGCCATGTTCAGGATGGACACATACCTCGCTCAGATTTTCAAA GAGAAAAAGAATCAGTCTGGGAGTGAAACTGCTCAATCGCAGCTTGTCTTGTTCAAGCTTCGTGTCCTTTCATTGCTGGAGATTTACCTACGGAGTCCTC ACGTTTTGACAATCTACTCATACTTGGCCAAGGCATTCGTTAATCCACAGACTACAGAAGTGAGCGAGCAGTTAGGACAGAGGATATGGGGAATTCTGAA CAAGAAACTATTGAAGGCAAAGGAGTTTCCAAAAGGAGATGATGTGAATCACTCAATGTTAGTATCGTTGCTGGAAAGAAATTTGAAGTTAGCATCAAGG CCATTCAAGAAGAAGAAATCTGCTGCTGATTCCAAGAAAAAACAGGCAGCTGCCCAGAAACGACACAAAATGATTGCTTCCCTTTCTCAAGATTCGACAT TTTGGATTCTGAAGATAATTGATGCCAGCAAGTTCAGCGGGGAAGAACTCGAGAGCGTCTTTGGTCCCTTAAAGAATATGCTTACGGGGTTCTTCGATGG TAAAAAATGTCCGATAAAGTCGGGGTTTGTGAAAGAACTATTCAAGAGGAGACCATGGATTGGGCACCACCTGTTCGAGTTCCTTCTAGATAAATGCTGC AGCTCAAAGCTGGAGTTTCGTCGAGTCGAAGCACTCGATCTGGTTCTCGAGGTGTTGAAATCAATGGTTCCGGCGGCTGGTTCTGATGAAAGTATGCGCA AGGCTGGAAAGAAGACGCTGAAGAGTCGCGTTCAGAAGCTGAGTCAGCTGGTGAAGGAGCTGGTGACAAATATGCCAGAGAAACAGTCGAGGCACGCTGA TATCCGCAAGTTCTGTGGGAAAGTATTTCAGATTATATCAGCCAACGACTTAGCCAAGCCTTTTCTGAAAGAGTTGGATTCAGATGCCCAAACCGCTTGT GAATTGCGCCTGGGTGAGGTTTTCCTCAACTTCAAGAAGGGGGGGAAGCAGCAATCCGTCTAA
AA sequence Show only first row Show all	>Lus10037435 pacid=23152317 polypeptide=Lus10037435 locus=Lus10037435.g ID=Lus10037435.BGIv1.0 annot-version=v1.0 MASNKRNSNSVEKVEEVVEGEIQLANPITKKMKKEHKSKDAGNVDPTARSETDTVKPMERKKLRKNLDKVRHRGPEKNEQEKPKPMDVDSKVDETKRGKM VASSSNVPAFHIDVFKELASADASVREAGVERLVTELQKVQNAYEGNKELYESGLKLEADKDDGLNDTAPSVRYAIRRLVRGASSSRECARQGYALGLSL LVCTISSIKVDSMLKLILEILEVSASMRGQELKDCLLGRLFSYGALARSGRLNELCISDPNTPVIKEFVSVLLTLAAKKSYLPEPVVTVILDLAEKLQVE QILNHVLEAPGLSEWFNDAVDAGNPDALLLALNLREKVSVDSLKFGTVLPYPFSPSSFFSSEHLNLLKNCWKNSTSCQPRVHSVWPVLVNILLPHLALDV LLLLLPRLPASLVPVVLSDKLVQGLMDILSTKDNWLYKVAQHFIKELSDWVGNDDVRRVAVIVSLQKHSNGKFDSITKTKTVKALLAEFKTESGCLLFIQ NLVNLFVDESNASDEPSDQSQTTDENSEMGLLEDKDSGVLGNSDSLKSWIAESLPSILKFLKLDPEEKLRVQKEILKFLTVQGLFSASLGSEVTSFELQE TFTWPKAATSSAICKICIEQIQSLLASAQKMESSPALLNGSEASDLGSFFMQFLSTLRSIPSVSLFRNLNDEDEKAYQKLLVTEASLHKQETKDMSENVT YKYHALRYLMIQLLLQVLLRPGEFNEPVFEIIICCKKAYQLADIPDQEEDESDGDTEWMDVLVDTLISLLPQSSAPVRTSIEQVFKCFSSDVTMDGLLQM LRIIKKDLKPSRHREADSENDDDADDDDLLDIEEDEDDEIDQAGTGETGESEEQTDDSEAVLEADGDEKESPEDSDDESDEGMDDDAMFRMDTYLAQIFK EKKNQSGSETAQSQLVLFKLRVLSLLEIYLRSPHVLTIYSYLAKAFVNPQTTEVSEQLGQRIWGILNKKLLKAKEFPKGDDVNHSMLVSLLERNLKLASR PFKKKKSAADSKKKQAAAQKRHKMIASLSQDSTFWILKIIDASKFSGEELESVFGPLKNMLTGFFDGKKCPIKSGFVKELFKRRPWIGHHLFEFLLDKCC SSKLEFRRVEALDLVLEVLKSMVPAAGSDESMRKAGKKTLKSRVQKLSQLVKELVTNMPEKQSRHADIRKFCGKVFQIISANDLAKPFLKELDSDAQTAC ELRLGEVFLNFKKGGKQQSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	0	1
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	1.4	0.9654
AT5G48240			unknown protein		Lus10036418 [exp]	1.7	0.9452
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10037059 [exp]	2.4	0.9465
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	2.6	0.9400
AT5G06110			DnaJ domain ;Myb-like DNA-bind...		Lus10026919 [exp]	4.1	0.9141
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	4.5	0.9207
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10026773 [exp]	4.9	0.9423
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10009913 [exp]	5.5	0.9047
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10004706 [exp]	6.3	0.9111
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026594 [exp]	6.9	0.9364

Compare expression of checked genes

Lus10037435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.