Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60690 570 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 565 / 0 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 557 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT1G60680 545 / 0 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 537 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 508 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 106 / 6e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04690 105 / 1e-25 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT5G53580 102 / 1e-24 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 94 / 3e-21 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041272 [exp] 679 / 0 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 583 / 0 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 548 / 0 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041303 [exp] 464 / 6e-166 AT1G60690 419 / 1e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 399 / 2e-139 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 380 / 4e-132 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 367 / 1e-126 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037408 [exp] 315 / 2e-107 AT1G60730 311 / 6e-106 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) Lus10010566 [exp] 199 / 3e-64 AT1G10810 198 / 3e-64 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G147700 [exp] 589 / 0 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 575 / 0 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 552 / 0 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 402 / 1e-140 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 395 / 4e-138 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 389 / 1e-135 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 377 / 1e-130 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 109 / 7e-27 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.001G052100 [exp] 105 / 6e-26 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.008G167400 [exp] 105 / 2e-25 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10037437 pacid=23152419 polypeptide=Lus10037437 locus=Lus10037437.g ID=Lus10037437.BGIv1.0 annot-version=v1.0 ATGGTGGGAGAAGTGATAAGGATGAAGCTAGGTTCGCAAGGTCTGGAAGTCTCGGCACAGGGACTTGGTTGCATGGGGATGTCCGCCTTCTACGGCCCTC CTAAACCCGATTCCGACATGATCGCCCTCATCCATCACGCCATCGACTCCGGCGTTACTTTCCTCGATACCTCCGATATGTACGGTCCGAAGACCAACGA GATCCTTCTCGGCAAGGCTTTGAAGGGTGGGGTTCGTGAGAAAGTTGAGCTGGCTACGAAGTTTGGAGTCAGCTATGAAGAAGGGACGAGAGGGATTAAA GGCGACCCCGCTTATGTTAGGGCTGCTTGCGAAGCTAGCTTGAAGAGGCTTGAAATTGACTGCATTGATCTTTATTACCAGCATCGAATTGACACTACCG TTCCCATCGAAATCACGGTTGGAGAGCTGAAGAAGCTAGTAGATGAGGGTAAGATAAAGTACATTGGTCTATCAGAGGCCTCCGCTGCAACAATCCGGCG AGCTCATGCTGTTCATCCAATAACAGCTGTGCAATTAGAGTGGTCATTGTGGTCAAGAGATGTGGAGGAAGAGATCATCCCAACGTGCAGGGAACTTGGG ATTGGGATTGTTGCCTACAGTCCCCTTGGCCGTGGGTTCTTTGCTTCAGGGCCTAAGCTTATTGAAAAAATTTCCGAAGGTGACTTCCGAAAGATGCAAC CAAGGTTCCAAGGTGAAAATCTGGACCACAACAAGACCTTATTCGAGAGGGTTAACGAGATTGCAAGCAGAAAAGGGTGCACACCGTCGCAACTAGCACT TGCTTGGGTGCATCACCAGGGGGACGATGTATGCCCCATTCCAGGAACTACCAAGATCGAAAACTTGAACCAGAATCTGGGAGCTCTGTCCGTCAAACTC TCGCATGAAGACATGGCTGAACTCGAAGCCATTGCTGCGGTGAAGGGTGAAAGATATATGGAAGGCATGGCAACGTTCAAGGGAGCCGACACTCCTCCTC TGTCTTCCTGGACCACTTGA
AA sequence Show only first row Show all	>Lus10037437 pacid=23152419 polypeptide=Lus10037437 locus=Lus10037437.g ID=Lus10037437.BGIv1.0 annot-version=v1.0 MVGEVIRMKLGSQGLEVSAQGLGCMGMSAFYGPPKPDSDMIALIHHAIDSGVTFLDTSDMYGPKTNEILLGKALKGGVREKVELATKFGVSYEEGTRGIK GDPAYVRAACEASLKRLEIDCIDLYYQHRIDTTVPIEITVGELKKLVDEGKIKYIGLSEASAATIRRAHAVHPITAVQLEWSLWSRDVEEEIIPTCRELG IGIVAYSPLGRGFFASGPKLIEKISEGDFRKMQPRFQGENLDHNKTLFERVNEIASRKGCTPSQLALAWVHHQGDDVCPIPGTTKIENLNQNLGALSVKL SHEDMAELEAIAAVKGERYMEGMATFKGADTPPLSSWTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	0	1
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	1.7	0.9012
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Lus10000966 [exp]	2.0	0.8681
AT5G11090			serine-rich protein-related (....		Lus10001946 [exp]	2.4	0.8737
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	2.8	0.8811
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10002217 [exp]	5.5	0.8539
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	7.1	0.8398
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10024372 [exp]	8.5	0.8286
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	8.9	0.8298
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	11.5	0.8262
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017141 [exp]	14.0	0.8314

Compare expression of checked genes

Lus10037437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.