Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03600 179 / 4e-58 PSB27 photosystem II family protein (.1) AT1G05385 43 / 2e-05 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006111 [exp] 44 / 2e-05 AT1G05385 202 / 2e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G056300 [exp] 192 / 4e-63 AT1G03600 202 / 5e-67 photosystem II family protein (.1) Potri.005G206200 [exp] 190 / 4e-62 AT1G03600 210 / 4e-70 photosystem II family protein (.1) Potri.008G152800 [exp] 43 / 4e-05 AT1G05385 201 / 9e-66 LOW PSII ACCUMULATION 19, photosystem II 11 kDa protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037438 pacid=23152494 polypeptide=Lus10037438 locus=Lus10037438.g ID=Lus10037438.BGIv1.0 annot-version=v1.0 ATGACATTGGCATCTCCCACCCTGCTTACCCCAACTCCACTCTCCCCCTCCTCCAAGCCCAATCTACAACCCTCCACTCCCGCCGCCGCTGTCTCGCTCC AACACCCGCACACCCCGCCGCCTTCCACTGGTCGTCGGCATTTGCTACTGTCGGCCGCAGCACTCGTCTCTGCGGCATCCTCATGGCTGACGATCTCCCC GGCGGCCTTCGCGGCCTCGGATGAGGAGTACGTGAAGGAGACGACTGAGGTGATCAACAAGGTGAGGTCCACCATCACGCTCGACAGGAACGCGCCGAAC GTGGCGGAGGCGGTGGCGGAGTTGAGGGAGACTTCCAATTCGTGGGTGGCCAAGTACAGGAAGGAGAAGGCGTTGCTTGCACGCGCCTCCTTCCGCGACA TGTACTCTGCACTCAACGCCGTCTCCGGACACTACATTAGCTTCGGCCCCACCGCGCCCTTGCCGGCCAAGCGTCGGGCCAGGATTCTGGAAGAGATGGA TACCGCCGAGAAGTCTTTGTTGAGAGGCAGATAA
AA sequence Show only first row Show all	>Lus10037438 pacid=23152494 polypeptide=Lus10037438 locus=Lus10037438.g ID=Lus10037438.BGIv1.0 annot-version=v1.0 MTLASPTLLTPTPLSPSSKPNLQPSTPAAAVSLQHPHTPPPSTGRRHLLLSAAALVSAASSWLTISPAAFAASDEEYVKETTEVINKVRSTITLDRNAPN VAEAVAELRETSNSWVAKYRKEKALLARASFRDMYSALNAVSGHYISFGPTAPLPAKRRARILEEMDTAEKSLLRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03600		PSB27	photosystem II family protein ...		Lus10037438 [exp]	0	1
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10004155 [exp]	1.0	0.9801
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10013435 [exp]	2.2	0.9213
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	2.4	0.9381
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	3.2	0.9392
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	5.5	0.9167
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10008567 [exp]	6.8	0.8903
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10012591 [exp]	9.2	0.9289
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Lus10013078 [exp]	9.5	0.9109
AT1G12900		GAPA-2	glyceraldehyde 3-phosphate deh...		Lus10041502 [exp]	11.5	0.9050
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Lus10042673 [exp]	13.2	0.8813

Compare expression of checked genes

Lus10037438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.