Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15550 612 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G41500 88 / 3e-18 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT3G18130 72 / 9e-14 RACK1C_AT receptor for activated C kinase 1C (.1) AT1G48630 72 / 1e-13 RACK1B_AT receptor for activated C kinase 1B (.1) AT5G52820 72 / 3e-13 WD-40 repeat family protein / notchless protein, putative (.1) AT5G16750 72 / 5e-13 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G08390 68 / 7e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 67 / 8e-12 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 66 / 8e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 67 / 1e-11 PRL1 pleiotropic regulatory locus 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041271 [exp] 812 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024727 [exp] 799 / 0 AT5G15550 635 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10032344 [exp] 778 / 0 AT5G15550 639 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 96 / 7e-21 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 90 / 6e-19 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10033710 [exp] 77 / 9e-15 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10012230 [exp] 74 / 6e-14 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 74 / 6e-14 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10031629 [exp] 74 / 7e-14 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G093300 [exp] 659 / 0 AT5G15550 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 82 / 2e-16 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.009G058000 [exp] 76 / 1e-14 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.019G087200 [exp] 69 / 3e-12 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.019G096900 [exp] 68 / 3e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 67 / 7e-12 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 67 / 1e-11 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.002G051900 [exp] 66 / 1e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 65 / 2e-11 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G179200 [exp] 66 / 3e-11 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0072 [flax] [poplar] Ubiquitin PF08154 [flax] [poplar] NLE NLE (NUC135) domain
Representative CDS sequence Show only first row Show all	>Lus10037439 pacid=23152597 polypeptide=Lus10037439 locus=Lus10037439.g ID=Lus10037439.BGIv1.0 annot-version=v1.0 ATGAAGGTTAAAACACCCCAACCGAAATACTGCCACCAGCAACTCCAAGGAGCAGCCACTCCCTCATTCGGCGAGAACTCTAAACAGTATCTCCTTCCTC CGGCGAGAACTCTAAACAGTGACCAAACGGACGCAGACATGGAGGAACGGCAGATTCAAGCTCGATTCGTCACAAAACTGAAGCCCCCTTTCAAAGCTCC ACCCACTACCATTACGATCCCTGCTAGTATTACCCGTCTTGGCCTCTCCTCTATTGTCAACAGCCTCCTCCAAGCTGGTGTTCCTGAATGGGAGTCTCAA CCCTTTGATTTTCTGATCGACGGGGAGCTGGTTCGAATGGCCCTCGACCAGTTTCTCCTAGCTAAGGGAATTTCAGCTGAGAGAACATTGGAAATTGAAT ATATAAAGGCAGTGGTTCCAAGGAAAGAGGAAGATCCTTCTTTCCATGACGATTGGGTCAGTGCAGTTGATGGTTCTTGTTCTAGGTTCATCTTGACTGG ATGCTATGATGGTTTCGGAAGGGTTTGGAAAGCTGCCGGAGTATGTACTCATATACTTGAGGGTCACACTGATGTAGTTACTTCTGTCACTGTCATTAAC CCTGAAGGGAATGCAACTCTTGCTACTGCATCAAAAGATCACACTGTTAGCCTGTGGAAGATGGATTCAGAAGAACCTAAGAAATCTCCTGCCAAGATTA GGCCATTCAAGATTTTGCGTGGTCACAATGCTTCTGTGCAGAGTGTTGCTGCCCAAACATCTGGAAACATGATTTGTTCAGGTTCTTGGGATTCTACAAT CAACTTGTGGCAGACGAACGAGTCTGCTGCAGAAGATAACTCGGTCTCGATCAAGAAGAGGAAAACAAAAAACGATACTCAAGATTCTCAATTGGAGGGT GCAGCAGTCTCTACGTTGGTGGGTCATACACAACGTGTATCTGCAGTTGCATGGCCAGAAGCTGATACAATCTACTCAGCATCCTGGGATCATTCCATTA GAAGATGGGATACCGAGACAGGCAAAGACGTTTTGAGCATATTCTGTGGAAAAGCCTTGAATTGCCTTGATATAGGAGGTGAAGGGTCCGCCCTTGTGGC CGCAGGAGGATCAGATCCTGTACTAAGGATATGGGATCCGCGAAAACCAGGAACTTCTGCTCCTGTGTACCAGTTTTCTTCCCATACTTCATGGATTTCA GCATGCAAGTGGCACTCGAAATCTCCGTTCCACTTACTTTCCGCATCTTACGATGGGAAAGTCATGCTGTGGGATCTGAGAACTGCGTGGCCGGTTTCTA AAGTGGAGTCCCATGAAGACAAGGTTTTATGTGCGGATTGGTGGAAAGGGGAAAGCGTAGTCAGTGGCGGGGTAGACTCGAAGCTTCGAATTCATTCTGG AATTTCTGTGCTTTGA
AA sequence Show only first row Show all	>Lus10037439 pacid=23152597 polypeptide=Lus10037439 locus=Lus10037439.g ID=Lus10037439.BGIv1.0 annot-version=v1.0 MKVKTPQPKYCHQQLQGAATPSFGENSKQYLLPPARTLNSDQTDADMEERQIQARFVTKLKPPFKAPPTTITIPASITRLGLSSIVNSLLQAGVPEWESQ PFDFLIDGELVRMALDQFLLAKGISAERTLEIEYIKAVVPRKEEDPSFHDDWVSAVDGSCSRFILTGCYDGFGRVWKAAGVCTHILEGHTDVVTSVTVIN PEGNATLATASKDHTVSLWKMDSEEPKKSPAKIRPFKILRGHNASVQSVAAQTSGNMICSGSWDSTINLWQTNESAAEDNSVSIKKRKTKNDTQDSQLEG AAVSTLVGHTQRVSAVAWPEADTIYSASWDHSIRRWDTETGKDVLSIFCGKALNCLDIGGEGSALVAAGGSDPVLRIWDPRKPGTSAPVYQFSSHTSWIS ACKWHSKSPFHLLSASYDGKVMLWDLRTAWPVSKVESHEDKVLCADWWKGESVVSGGVDSKLRIHSGISVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15550			Transducin/WD40 repeat-like su...		Lus10037439 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	3.3	0.8573
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	3.5	0.8448
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	5.7	0.8428
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	6.0	0.8347
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10043071 [exp]	6.0	0.8158
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	7.7	0.8374
AT2G42810		AtPP5, PP5.2, P...	Arabidopsis thaliana protein p...		Lus10031381 [exp]	11.2	0.8107
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	15.0	0.8357
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10003615 [exp]	15.7	0.7990
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10023835 [exp]	17.1	0.8321

Compare expression of checked genes

Lus10037439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.