Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 84 / 9e-17 F-box/RNI-like superfamily protein (.1) AT5G03100 74 / 6e-14 F-box/RNI-like superfamily protein (.1) AT5G53840 71 / 9e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56560 68 / 1e-11 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G78750 66 / 5e-11 F-box/RNI-like superfamily protein (.1) AT4G00160 65 / 7e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G03220 64 / 2e-10 Protein with RNI-like/FBD-like domains (.1) AT5G22670 63 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G51530 62 / 7e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT2G26030 62 / 7e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029952 [exp] 291 / 3e-93 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10029953 [exp] 282 / 5e-90 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 164 / 5e-42 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035308 [exp] 133 / 2e-35 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10039271 [exp] 131 / 2e-33 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10035326 [exp] 114 / 1e-28 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1) Lus10027471 [exp] 108 / 2e-25 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10030031 [exp] 99 / 1e-24 AT2G04230 53 / 4e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10018544 [exp] 99 / 5e-23 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G099400 [exp] 80 / 2e-15 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104200 [exp] 67 / 1e-11 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 67 / 2e-11 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 67 / 2e-11 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G104300 [exp] 59 / 7e-09 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.013G146800 [exp] 56 / 7e-08 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.013G151200 [exp] 56 / 1e-07 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.011G098700 [exp] 54 / 2e-07 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.013G151700 [exp] 54 / 2e-07 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.017G146400 [exp] 53 / 5e-07 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037440 pacid=23152598 polypeptide=Lus10037440 locus=Lus10037440.g ID=Lus10037440.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGTCAACCGTTGATCGAATCTCGGAATTACCAGACGAAATTCTCCACTGCGTCCTCCGTCGCATTCAGCCTCAATGGAAAGCGGCCCAGA TCATCACTCTGTCTAAGCGATGGCGGAGCCTTTGGCGGTCGTACCCTGTCGTGGATTACTCCGACGAAGACCGATTAAAGATGAAAAACTTCCAGAAATT TGGCGAAGCTACGATTGCAAGGTTTTCTCGAGACAGCCTGTTGGGGATGAAAGCTCTCAAGCTCTCGCTAAATGAATACGCGTATGATTTCCGTTTCCCT GTTATCAAGCAGCTTTTGGATCTAGCATCAGAGAGGAAAGCAGAAGAGATCGACATTCTTACCTTCAGCAAGAGCAGCTCTATGAGATTTCCCTTTCAAT TGCTCTGCAATTCTGCGACAAAGATTCTCAGAGTGACAGGTCTTCGATTTGCCTATAACAAGGATTGTGATTCTATGCATTCACTGAGATTCCTGCATCT GATTTCTGTCTCTTTCGAAGACGATCGGCTTTTGGGTAACCTAATAGCTAGCTCGCCTATCCTGGAAACCTTAGAAATCAATAAATGTTCTACCACGAGG GAGCTCAAGGTTTGTACTCATCATATCGATCTGAAGATCCTCCGTATTGCTGGATGTGGTTCAAAGGAAATCGAGATTGCAGCTCCTGGATTACAGATTC TGCGTCTTGAAGGTTTACATCTGTCTAAGTTCGAATTAACCGCCCCACTGCTGAATCTCTTGGAAATTACACATTGTAACGTGAGAGGCCTCGACTTTCA ATTACTCTCCAATTCTGCGGCAAGGATGCTCAGGATGACAAGTGTTCGATTCGCCTATAATAAGCATTACGATTATCTTCCACTTTCTATGAATTCCCTG AGATTCCTGCATCTGAGTTTTGTTTCTTTCGAAGACAACCGGCTTTTGGGAAACCTGATAGTTAGCTCTCCACTCCTGGAAACCCTAGAAATCAGTAGAT GTTCTACCACAAAAGAGCTCAAGGTTTCCACTCATCATACCGGCCTGAAGACCCTCAGTGTCGTTGGATGCGGTTCGAAGAAAATCGAGATTGCAGCTCC TGGACTAGAGACTCTGCGTCTTGAAGATTTACATCCGTCAAAGTTTGAATTATTCGCTCCACAGCTGAATCTCTTGGAAATCACAGATTGTTACCTTAGA GGCCGCTGTTTTGACCTCCTGATCGTTAAGCTCCGATCTCTGAAATCGTTAACACTCAATCACCTAGACATGAACAGGAAGAAGCTGAAGCTGAAGCTTT CGAGTCATAATAAGCTCGAGGAATTCATACTGAGGGCACCTCATAGATTGGAGGAGATCGAGATTGATGCTGGTACAAGTTTGGTAAAATTCTTGCTCGT CTGTGATGCTTACTGCTCTCTTGACGAAATAAAGAAATGTCAAATCAGTAACGTCCAGTTTGATGAGGTCGATTTCGGCTTGGCGATCCATACCCTTAAG AATGTAACACGTCATTGGTTTGTTGCACTGAATAGTTTGGTCGCCAGACTCACTCAGTTCTCCATAGTGAACATTATTGCCAATGATTTTCACTATTTCC AGACTGAGCTTAAGGAGGATGAAGTGGATCACAGTATGCCACCGGTGGAAATCAAGCACTTGACAATTCAGATGGGTAAATTCTCAAGTACTCACCATAG CAACTTTCTGGGAGGTCTCTTTTCGACCTTACGCCCAAGGTATTTAACAATAGTTCAAGACGGTTGTGACAGCTATGAGATGTTGGTCCACAACTTTTTG ACAGTGATAAAGAACGAGCATCGTAATTGGCGAGGTCAGTTGAAAGATGTTAAGTTAGCAACGGCAGATATAGACCGAGCAATTAAGAAAGGAGTTGATG ATGCCGTGGAATTTATCAGTGCTTCGAAGAAAACGGTTACCAAGCTTACATCCATCAGCTTCATGCTAACTTGGAATTGA
AA sequence Show only first row Show all	>Lus10037440 pacid=23152598 polypeptide=Lus10037440 locus=Lus10037440.g ID=Lus10037440.BGIv1.0 annot-version=v1.0 MEEKSTVDRISELPDEILHCVLRRIQPQWKAAQIITLSKRWRSLWRSYPVVDYSDEDRLKMKNFQKFGEATIARFSRDSLLGMKALKLSLNEYAYDFRFP VIKQLLDLASERKAEEIDILTFSKSSSMRFPFQLLCNSATKILRVTGLRFAYNKDCDSMHSLRFLHLISVSFEDDRLLGNLIASSPILETLEINKCSTTR ELKVCTHHIDLKILRIAGCGSKEIEIAAPGLQILRLEGLHLSKFELTAPLLNLLEITHCNVRGLDFQLLSNSAARMLRMTSVRFAYNKHYDYLPLSMNSL RFLHLSFVSFEDNRLLGNLIVSSPLLETLEISRCSTTKELKVSTHHTGLKTLSVVGCGSKKIEIAAPGLETLRLEDLHPSKFELFAPQLNLLEITDCYLR GRCFDLLIVKLRSLKSLTLNHLDMNRKKLKLKLSSHNKLEEFILRAPHRLEEIEIDAGTSLVKFLLVCDAYCSLDEIKKCQISNVQFDEVDFGLAIHTLK NVTRHWFVALNSLVARLTQFSIVNIIANDFHYFQTELKEDEVDHSMPPVEIKHLTIQMGKFSSTHHSNFLGGLFSTLRPRYLTIVQDGCDSYEMLVHNFL TVIKNEHRNWRGQLKDVKLATADIDRAIKKGVDDAVEFISASKKTVTKLTSISFMLTWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10037440 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	7.2	0.7820
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	11.6	0.7531
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	12.1	0.7581
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	13.0	0.7481
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	14.3	0.6654
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	15.1	0.7562
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031289 [exp]	15.9	0.7572
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009451 [exp]	15.9	0.7117
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	23.9	0.7096
AT3G62130		LCD	L-cysteine desulfhydrase, Pyri...		Lus10038033 [exp]	24.9	0.6983

Compare expression of checked genes

Lus10037440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.