Plant FIBer expression Database

Lus10037441 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10800 57 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041270
[exp]
288 / 1e-98 AT1G10800 125 / 1e-36 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G147600
[exp]
85 / 2e-19 AT1G10800 73 / 2e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10037441 pacid=23152480 polypeptide=Lus10037441 locus=Lus10037441.g ID=Lus10037441.BGIv1.0 annot-version=v1.0
ATGAACTCATCTATACCAATAAGCTCAGCAGCCACCAACAGCACCACCACCTCCATTGATTCCATACAACTCTCAATCCAAAACCTTCTCAAGCATTGGA
ACACAAGGCAGAAATACTGGACACCATTCTTCAGATCACCTGACCAGGAGGCCCACCAGCTGCAACATCCGAACACACCTCCATGGCGAACCAAACTAGC
AACCTTCCTCGAGTCCACACCCCTCCGAATCGCAGTCATTGTTCTCCTCCTTCTCGACCTCTTCCTCACGACCCTTGATCTCTCCTCCTCCATACTGACA
CCATGCCATCCAATGAAACCATTAGCCGCTGAATGGTTTCACTGGGTGGAGATTGGGATCCTGAGCCTGCTCTGTGCCAAGCTAGTGGCTCTACTCGTGG
CGATTGGCCCCACGTTGTTCTTTGGCAGGCCAGGGTATGTCATCGATGGTGTGGTGGTGGTGGGAGCTTTGGTCCTGGAAGGCCTCTTGGAAAGGAGAGG
AGGAGGTTTGGTGGTGGTGGTCAGCTTGTGGAGAGTGGTGAGGGTGGTCGAGAGTGCCTTCGAGCTGAGCGATGAGGCGATCGAGACGATGATCAAAGGG
ATAGTGCTCGAGTTTGAGGCGCTCCGAGCAGAGAACGCCATGTTGTTCGAGACCATAGCTGACAGAGATAGGACCACCAGGATGCTGCAAGAAATGGTAG
ACAAGTTGCAAACTGTAGAGAATCATTGCATCCTAGTAACTCGAGATTAA
AA sequence
>Lus10037441 pacid=23152480 polypeptide=Lus10037441 locus=Lus10037441.g ID=Lus10037441.BGIv1.0 annot-version=v1.0
MNSSIPISSAATNSTTTSIDSIQLSIQNLLKHWNTRQKYWTPFFRSPDQEAHQLQHPNTPPWRTKLATFLESTPLRIAVIVLLLLDLFLTTLDLSSSILT
PCHPMKPLAAEWFHWVEIGILSLLCAKLVALLVAIGPTLFFGRPGYVIDGVVVVGALVLEGLLERRGGGLVVVVSLWRVVRVVESAFELSDEAIETMIKG
IVLEFEALRAENAMLFETIADRDRTTRMLQEMVDKLQTVENHCILVTRD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G10800 unknown protein Lus10037441
[exp]
0 1
AT3G23770 O-Glycosyl hydrolases family 1... Lus10023226
[exp]
1.7 0.9448
AT5G67090 Subtilisin-like serine endopep... Lus10024815
[exp]
1.7 0.9420
AT1G30500 CCAAT NF-YA7 "nuclear factor Y, subunit A7"... Lus10012202
[exp]
2.0 0.9429
AT3G60330 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase... Lus10042904
[exp]
4.5 0.9380
AT5G37720 DIP2, ALY4 interacting with DNA-binding d... Lus10000446
[exp]
4.5 0.9223
AT5G26749 C2H2 and C2HC zinc fingers sup... Lus10031439
[exp]
5.3 0.9247
Lus10039025
[exp]
5.5 0.9363
AT5G60900 RLK1 receptor-like protein kinase 1... Lus10009916
[exp]
11.5 0.9295
AT2G04220 Plant protein of unknown funct... Lus10027127
[exp]
11.7 0.9051
AT3G52220 unknown protein Lus10038762
[exp]
12.1 0.9346

Lus10037441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.