Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72430 101 / 2e-28 SAUR-like auxin-responsive protein family (.1) AT1G17345 99 / 3e-27 SAUR-like auxin-responsive protein family (.1) AT5G20820 76 / 1e-18 SAUR-like auxin-responsive protein family (.1) AT3G12955 54 / 4e-10 SAUR-like auxin-responsive protein family (.1) AT4G34760 46 / 4e-07 SAUR-like auxin-responsive protein family (.1) AT2G21220 42 / 9e-06 SAUR-like auxin-responsive protein family (.1) AT5G20810 42 / 2e-05 SAUR-like auxin-responsive protein family (.1.2) AT3G43120 42 / 3e-05 SAUR-like auxin-responsive protein family (.1) AT1G16510 41 / 5e-05 SAUR-like auxin-responsive protein family (.1) AT5G50760 41 / 7e-05 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013181 [exp] 203 / 1e-68 AT1G72430 119 / 9e-36 SAUR-like auxin-responsive protein family (.1) Lus10031790 [exp] 61 / 2e-12 AT3G12955 98 / 8e-27 SAUR-like auxin-responsive protein family (.1) Lus10012189 [exp] 43 / 5e-06 AT4G34760 169 / 3e-56 SAUR-like auxin-responsive protein family (.1) Lus10007553 [exp] 43 / 8e-06 AT4G34760 168 / 9e-56 SAUR-like auxin-responsive protein family (.1) Lus10034507 [exp] 42 / 2e-05 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10024326 [exp] 41 / 4e-05 AT1G75580 166 / 2e-54 SAUR-like auxin-responsive protein family (.1) Lus10012432 [exp] 40 / 6e-05 AT1G75580 164 / 9e-54 SAUR-like auxin-responsive protein family (.1) Lus10033161 [exp] 40 / 0.0001 AT1G75590 187 / 4e-62 SAUR-like auxin-responsive protein family (.1) Lus10023970 [exp] 40 / 0.0001 AT1G29450 97 / 2e-26 SAUR-like auxin-responsive protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071000 [exp] 110 / 5e-32 AT1G72430 126 / 9e-39 SAUR-like auxin-responsive protein family (.1) Potri.001G164300 [exp] 91 / 2e-24 AT1G72430 108 / 2e-31 SAUR-like auxin-responsive protein family (.1) Potri.006G137000 [exp] 90 / 4e-24 AT5G20820 135 / 3e-42 SAUR-like auxin-responsive protein family (.1) Potri.001G458000 [exp] 61 / 2e-12 AT3G12955 86 / 3e-22 SAUR-like auxin-responsive protein family (.1) Potri.011G143400 [exp] 60 / 3e-12 AT3G12955 91 / 2e-24 SAUR-like auxin-responsive protein family (.1) Potri.004G164400 [exp] 46 / 3e-07 AT4G34760 182 / 4e-61 SAUR-like auxin-responsive protein family (.1) Potri.009G126000 [exp] 45 / 9e-07 AT4G34760 179 / 4e-60 SAUR-like auxin-responsive protein family (.1) Potri.002G024300 [exp] 42 / 7e-06 AT1G75580 170 / 2e-56 SAUR-like auxin-responsive protein family (.1) Potri.005G237200 [exp] 42 / 1e-05 AT1G75580 164 / 5e-54 SAUR-like auxin-responsive protein family (.1) Potri.006G211000 [exp] 42 / 2e-05 AT2G36210 130 / 3e-40 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10037443 pacid=23167008 polypeptide=Lus10037443 locus=Lus10037443.g ID=Lus10037443.BGIv1.0 annot-version=v1.0 ATGGCCAAGGTCGGAAAGCTCACCAAGCTAAAATCCGCCATCAAGAGGTGGCCCTCTTTCACCACCTCCAAGCAACACCATTCATCCTCCTCCTCCTCCA TGGACCGCCATGTCGACCACCGCCAGCAGGAAGAAGAAGACTCCGATGATCATAGTCATCATGATCTCCACCAGGTGTATGTCGGGAAGTCGCGGCGGCG GTACCTGCTGACGTCGGAGGTGATGTGCCATCCCCTGTTTCAGGAACTGATGCAGAGGTCAGGCGGGTTCGACGGCGACGGCAACGTTGTTGTCAGGAGC GAGGTGGTTCTGTTCGAGCATTTGCTTTGGATGATTAACCAGAATTGCGGCGGCGGCGGAGAGGCGGCGGTATCTGGGCCGATGGAGGATTTGGTCGGAT TCTATTGCTGCTGA
AA sequence Show only first row Show all	>Lus10037443 pacid=23167008 polypeptide=Lus10037443 locus=Lus10037443.g ID=Lus10037443.BGIv1.0 annot-version=v1.0 MAKVGKLTKLKSAIKRWPSFTTSKQHHSSSSSSMDRHVDHRQQEEEDSDDHSHHDLHQVYVGKSRRRYLLTSEVMCHPLFQELMQRSGGFDGDGNVVVRS EVVLFEHLLWMINQNCGGGGEAAVSGPMEDLVGFYCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72430			SAUR-like auxin-responsive pro...		Lus10037443 [exp]	0	1
AT2G41905			unknown protein		Lus10026313 [exp]	3.9	0.7857
AT4G36750			Quinone reductase family prote...		Lus10014325 [exp]	6.9	0.7832
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	10.4	0.7473
					Lus10031697 [exp]	12.1	0.7679
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10012171 [exp]	16.5	0.7712
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	23.2	0.7749
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	24.9	0.7694
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	25.3	0.7448
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	30.3	0.7690
AT3G11760			unknown protein		Lus10029364 [exp]	34.8	0.6650

Compare expression of checked genes

Lus10037443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.