Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72440 861 / 0 SWA2, EDA25 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013182 [exp] 1434 / 0 AT1G72440 1011 / 0.0 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G164100 [exp] 995 / 0 AT1G72440 972 / 0.0 SLOW WALKER2, embryo sac development arrest 25, CCAAT-binding factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03914 [flax] [poplar] CBF CBF/Mak21 family
Representative CDS sequence Show only first row Show all	>Lus10037444 pacid=23167271 polypeptide=Lus10037444 locus=Lus10037444.g ID=Lus10037444.BGIv1.0 annot-version=v1.0 ATGGCGACAAAGAAGCAGAAGAAGTCCTCCGCCGCCGACGGCGGTAGAAAGGAGACGGACGGCGACATCGACCTTCTGAAATCAGAAGTCGCCTCTTTTG CTTCTACGCTAGGCCTTTCTTCTTCAGCTCCATCCTCTTCCTCCGGCTTCAGCGATGCCGATTTCCGGAAAACCGGCCGTCTCAAGCCAATTCAGAAATC GAAACCCCAATCCGATACCAAAACCAAGCCTCCTCAGAAGCAGGACAAGAAACCCAGAAACGAGAAATCCAATACCAAACCGGAGATCAAGCCGAAGCCA AAGCCTCCAGTTTTGACGCTGGATGATGATGATTCAGCTAACCCTGCCAGGGCGAGAGCGGCTTACAAGTACAAGGACCTCCCCAAGCTGCCGCTGATGA AGGCAAATGCGACTGGCGTGTGGCACGTGGATGCGGAGGAATTGGAGGTGAAAGTGTTGGGAGAAGCTCACAAGAAGGTGGATGTTAAGATGAGAGTGGA GGAGTGGAAGCAGTTTGTAGAGAAGAAGAGGGAATTGGCTGAGAGGTTGATGTGGCAGTATGTGCAGGATTATGAACAGGGGAGAGGGCAGAGTGGAGAT ATTAAGATGCTTGTTACTACTCAGAGGTCTGGTACTGCTGCTGATAAGGTGTCAGCATTCGCGGTTCTTATTGGAGATAATCCTATGGCTAATCTGCGAT CAGTGGATGCTCTTCTTGGAATGGTGGCATCAAAGGTGGGAAAGCGCCATGCATTGTCAGGATTTGAAGCATTGCGAGAGCTGTTTGTTGAAAGCTTGCT ACCTGATCGGAAGCTGAAGACACTCTTACAGAGGCCTCTGAATAATCTTCCTGAGACAAAAGATGGTTACTCTCTTCTACTATTTTGGTATTGGGAGGAT TGCCTAAAACAGAGGTATCAACGTTTTGTTTCGGCACTTGAGGAAGCATCCAAAGATATGCTACCCATATTAAAAGATAAGGCGTTGAAGAGCATGTATT TGCTGTTGAAGAGCAAATCAGAGCAGGAGCGCAGGTTGCTCTCTTCACTAGTTAACAAACTTGGCGATCCGCAAAGTAAGGGTGCATCTAATGCTGAGTA TTACTTGTCAAACCTGTTGTCCAATCATCCCAGTATGAAGGCCGTAGTCATTGATGAAGTGGACACCTTTCTCTTTCGGCCTCACTTGGGGATGCGAGCT AAATACTATGCCATTAACTTTTTGAGTCAAGTTCGACTGAGCAATAGAGATGATGGACCTAAGGTGGCAAAACGATTGATAGATGTGTACTTTGCATTAT TCAAGGTGCTAATTACTGAGGCAGGTGGTCAGAAAACGAACAAAGATGCCAAAGCTGAAGATGAAAGTACTCCTGGTGCTTCTAAGAATGAAAAAGCCAA AGCTTCAGCAGAATCTCATATTGAGATGGATTCACGAATTCTGTCAACTCTTTTAACAGGAGTAAATAGGGCATTTCCTTACGTTTCAAGTACTGAGGCT GACGACATCATTCAGAGTCAAACACCAATGCTCTTCCAATTGGTCCACTCCAATAACTTTAATGTAGGAGTTCAAGCCTTGATGCTCCTCGATAAAATCT CATCCAAGAATCAGATCGTGGAAATGTTCATTGGACTTATACTCAGAGCCATGAAAAACGACGTGAACCTAAAGCGTGTTGCTGCCTTCGCAAAGCGCCT ATTGCAAGTTGCTATGCAGCAGCCGCCTCAATATGCTTGTGGATCTCTGTTTCTGCTTTCTGAAGTGCTGAAAGCAAGGCCCCCTCTATGGAATATGGTG CTTCAGAGTGAAGCTTTGGATGACGAAGATGAACATTTTGAGGATGTTCTGGAAGAGACCATAACCAAGGAAGATCATGGTGATATTTCAACAGATGAAC GTAATGAGAATGGTGACCCTGAATCTGACTCTTCTGATGATGAAGAAGTCAATGCTGCCGCATCGAGTTCCGAGGATGATGATTCAGATGACGACGAGCA ACTGATAAGAGAAGATCATTCAGAAGAGGAGATATTGATACCGAAACCTAGCGACGAGAAAGCTGAAGCATGTTCTGCAAAATCTTCCCTGCCTGGGGGA TACGATCCTCGTCATAGGGAGCCGTCTTACTGCAATGCAGACCGTGCTAGCTGGTGGGAGCTGAGAGTGCTTGCATCACATGCACACCCTTCGGTTGCTA CCATGGCTGGGACTCTTCTCTCTGGAGCAAATATAGTTTACAATGGAAACCCACTAAACGACCTGTCGTTGAATGCTTTCCTGGACAAGTTCATGGAGAA GAAAGTCAAGCAGAAGGAATGGCACGGAGGCTCCCAAATCGAACCCGCAAAGAAGCTCGACATGGACAACAACCTGATCGGACCCGAGATTGTATCGTTG GCCGAGGAGGATGTCGCTCCCGAAGATGTCGTCTTCCACAAGTTCTACACGAACAAAATGAACAGCACGAATTCGAAGAAGCAAAAGAAGAAGAAGAAGA AGACTGCCGACGAAGAGGATGCAGAAGAGCTCTTTGATGCAGGTGACGGTGGCGCCGATGATGATGTGGCAGGAGTTGACGAGAGCGATAACGAAGAGAT CGACAACTTGCTGGATGCGACATTAGAAGAAGACCATGACGGGGAGTACAACTACGATGACCTGGACCAGATCGCTGACGAGGATGACGATGAGCTCCTG GCGGATGTGAGTGACACCGAAATCGGAGCATTTTCAGATATTGGCGATGATGAGAGCGATATCGAGGTAGGAGATGTGGACGATGGCGATGATGATGAGG TGACGGTTATGGATACAAAGAAAAGGAAGCGTCCGAAGAAGATTGGTGGTGGTAAGGGTGCTTCGCCATTTGCGAGTTTCGAGGAGTACGAGCATTTGAT GGAAGAAGGGGAAGGGGAAGGAGAGGAGGAGGAGGATAGTCCTAGTCCGAAGAAGGACAAGAAGAAGAAGCCGAAATCACGAAACAAGAAGCAGAAGAGG AAGAAGTCATTGTCAGACTAA
AA sequence Show only first row Show all	>Lus10037444 pacid=23167271 polypeptide=Lus10037444 locus=Lus10037444.g ID=Lus10037444.BGIv1.0 annot-version=v1.0 MATKKQKKSSAADGGRKETDGDIDLLKSEVASFASTLGLSSSAPSSSSGFSDADFRKTGRLKPIQKSKPQSDTKTKPPQKQDKKPRNEKSNTKPEIKPKP KPPVLTLDDDDSANPARARAAYKYKDLPKLPLMKANATGVWHVDAEELEVKVLGEAHKKVDVKMRVEEWKQFVEKKRELAERLMWQYVQDYEQGRGQSGD IKMLVTTQRSGTAADKVSAFAVLIGDNPMANLRSVDALLGMVASKVGKRHALSGFEALRELFVESLLPDRKLKTLLQRPLNNLPETKDGYSLLLFWYWED CLKQRYQRFVSALEEASKDMLPILKDKALKSMYLLLKSKSEQERRLLSSLVNKLGDPQSKGASNAEYYLSNLLSNHPSMKAVVIDEVDTFLFRPHLGMRA KYYAINFLSQVRLSNRDDGPKVAKRLIDVYFALFKVLITEAGGQKTNKDAKAEDESTPGASKNEKAKASAESHIEMDSRILSTLLTGVNRAFPYVSSTEA DDIIQSQTPMLFQLVHSNNFNVGVQALMLLDKISSKNQIVEMFIGLILRAMKNDVNLKRVAAFAKRLLQVAMQQPPQYACGSLFLLSEVLKARPPLWNMV LQSEALDDEDEHFEDVLEETITKEDHGDISTDERNENGDPESDSSDDEEVNAAASSSEDDDSDDDEQLIREDHSEEEILIPKPSDEKAEACSAKSSLPGG YDPRHREPSYCNADRASWWELRVLASHAHPSVATMAGTLLSGANIVYNGNPLNDLSLNAFLDKFMEKKVKQKEWHGGSQIEPAKKLDMDNNLIGPEIVSL AEEDVAPEDVVFHKFYTNKMNSTNSKKQKKKKKKTADEEDAEELFDAGDGGADDDVAGVDESDNEEIDNLLDATLEEDHDGEYNYDDLDQIADEDDDELL ADVSDTEIGAFSDIGDDESDIEVGDVDDGDDDEVTVMDTKKRKRPKKIGGGKGASPFASFEEYEHLMEEGEGEGEEEEDSPSPKKDKKKKPKSRNKKQKR KKSLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10037444 [exp]	0	1
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Lus10013182 [exp]	1.0	0.9607
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10017403 [exp]	2.0	0.9553
AT3G18610		ATNUC-L2, PARLL...	PARALLEL1-LIKE 1, nucleolin li...		Lus10010202 [exp]	2.8	0.9475
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	4.9	0.9484
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Lus10026158 [exp]	5.0	0.9140
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10031414 [exp]	6.5	0.9136
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	6.8	0.8810
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	8.4	0.8918
AT2G45030			Translation elongation factor ...		Lus10018604 [exp]	12.2	0.8726
AT5G22100			RNA cyclase family protein (.1...		Lus10013351 [exp]	12.6	0.8873

Compare expression of checked genes

Lus10037444 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.