Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04770 391 / 5e-138 RPSAB 40s ribosomal protein SA B (.1.2) AT1G72370 385 / 1e-135 AP40, RPSAA, RP40, P40 40s ribosomal protein SA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013183 [exp] 518 / 0 AT3G04770 424 / 7e-151 40s ribosomal protein SA B (.1.2) Lus10040626 [exp] 412 / 4e-146 AT3G04770 421 / 5e-150 40s ribosomal protein SA B (.1.2) Lus10018284 [exp] 412 / 5e-146 AT3G04770 424 / 3e-151 40s ribosomal protein SA B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071200 [exp] 416 / 2e-147 AT1G72370 384 / 1e-134 40s ribosomal protein SA (.1.2) Potri.001G164000 [exp] 415 / 6e-147 AT1G72370 386 / 9e-136 40s ribosomal protein SA (.1.2) Potri.015G112900 [exp] 409 / 1e-144 AT3G04770 399 / 6e-141 40s ribosomal protein SA B (.1.2) Potri.012G117600 [exp] 399 / 1e-140 AT3G04770 393 / 1e-138 40s ribosomal protein SA B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0067 [flax] [poplar] SIS PF00318 [flax] [poplar] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Lus10037445 pacid=23167136 polypeptide=Lus10037445 locus=Lus10037445.g ID=Lus10037445.BGIv1.0 annot-version=v1.0 ATGGCGACCGATGCTGCCCCTCCACGTGCCCTCTCCGCCAGGGAGCTGGACATCCAGATGATGTTGGCTGCTGAGGTTCACCTCGGCACCAAGAACTGTG ATTTCCAGATGGAGAGATACGTCTTCAAGCGCCGCAATGATGGAATCTACATCATTAACCTTGGGAAGACATGGGAAAAGCTCCAGATGGCTGCCCGAGT TATTGTCGGCATTGAGAACCCTCAGGATATCATTGTCCAATCTGCTAGGCCTTATGGTCAGAGAGCTGTGCTCAAGTTTGCTCAGTACACTGGTGCGCAT GCCATTGCTGGCAGGCATACTCCTGGTACCTTCACTAACCAGATGCAGACCTCATTCAGTGAGCCCCGTCTCTTGATCCTTACCGACCCAAGGACCGATC ATCAGCCAATTAAGGAAGGTGCTCTTGGAAACATCCCAACCATCGCCTTCTGCGATACTGACTCTCCCATGCGATACGTGGATATCGGTATTCCTGCCAA CAACAAGGGAAAGAATAGTATCGGGTGTCTCTTCTGGCTTTTGGCACGAATGGTTTTGCAGATGCGTGGAACTATTCCCCAAGGACACAAGTGGGATATC ATGGTGGACTTGTTCTTCTTCAGAGAGCCTGAAGAGCAAAAGCAAGACCAAGATGAGGAAATTCCCGACTATGCTGTTGCTGCTCCTGATTTCTATGGTA TTGCTGCTGGTGGTGACTGGAACACTCCAGCTGGTGATGCCCAGTGGACTCCAGATGCTACACAACCCCCCATTTCTGGTGTCCCGGCAGCTTACATTGC TGAGCCAACTGCTGCACCAATTGCTGGTGCTGGCGAGTGGGATGCTGCACCGGTAACTGCCCCACCTTATCCTCCGGCATCTGCAGCTACTGGATGGGAT GAAGTATGA
AA sequence Show only first row Show all	>Lus10037445 pacid=23167136 polypeptide=Lus10037445 locus=Lus10037445.g ID=Lus10037445.BGIv1.0 annot-version=v1.0 MATDAAPPRALSARELDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVGIENPQDIIVQSARPYGQRAVLKFAQYTGAH AIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDIGIPANNKGKNSIGCLFWLLARMVLQMRGTIPQGHKWDI MVDLFFFREPEEQKQDQDEEIPDYAVAAPDFYGIAAGGDWNTPAGDAQWTPDATQPPISGVPAAYIAEPTAAPIAGAGEWDAAPVTAPPYPPASAATGWD EV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	0	1
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	1.7	0.9789
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	2.0	0.9763
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	2.4	0.9715
AT3G49910			Translation protein SH3-like f...		Lus10018139 [exp]	2.8	0.9711
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	4.8	0.9473
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	5.3	0.9564
AT5G52370			unknown protein		Lus10040713 [exp]	6.0	0.9584
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	6.6	0.9476
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	7.1	0.9685
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	8.1	0.9588

Compare expression of checked genes

Lus10037445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.