Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14205 936 / 0 Phosphoinositide phosphatase family protein (.1) AT3G43220 856 / 0 Phosphoinositide phosphatase family protein (.1.2) AT5G20840 847 / 0 Phosphoinositide phosphatase family protein (.1) AT1G22620 707 / 0 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT1G17340 676 / 0 Phosphoinositide phosphatase family protein (.1) AT3G51460 180 / 8e-48 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 154 / 6e-39 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G51830 122 / 8e-29 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G59770 116 / 3e-26 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013184 [exp] 1558 / 0 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 992 / 0 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 890 / 0 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10014827 [exp] 694 / 0 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016697 [exp] 175 / 6e-46 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 152 / 2e-40 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 145 / 6e-36 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10025267 [exp] 116 / 1e-26 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10009080 [exp] 103 / 1e-22 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071300 [exp] 1148 / 0 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 1131 / 0 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 1059 / 0 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.006G136400 [exp] 1019 / 0 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.019G080300 [exp] 687 / 0 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 686 / 0 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.005G100500 [exp] 139 / 3e-34 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 134 / 2e-32 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.013G128500 [exp] 93 / 7e-19 AT3G59770 2267 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10037446 pacid=23167316 polypeptide=Lus10037446 locus=Lus10037446.g ID=Lus10037446.BGIv1.0 annot-version=v1.0 ATGGTAAACTCGTCAGCTCTTCTTCCTCCCAATCCTCCCATCTCTCGATCTGATTCCTCCGTTTCCTCCTCTGGTTCGCCTCTCCATTTCCCTCTTCTCC AAGATCACCGCCTAGATTCTTTCCTTTTCTCGGTTTGTGTTTGTTTTCGCGCGGAAGAAGAAAAAGGGAGGGTCTTCTCGATCTCCCGCAGCTGTATTTC GATCTGCGGCGGGGGAGAAGAGTTGACTCTTTGGGGATTTCTGGGGGCTGAGGAAGAAGATCTAGTTACTATGGACATGGAGACATCGTTACCTTCGATG GCTCCTTCGAATTTGGTGTATTTGCAGAAATTCAGACTCTATGAGACTCCCTTGCACTTCTATATGATCGGAAGGGACAAAAGCAGAACCTTTTGGAAGG TGTTAAAGATTGATCGATCAGACCCATCTGAGTTAAATATCGTAGAAGATTCTACATCATACAGTGAAAGTGAATGCTGCGAATTGCTAAGGAGAATACA TGAAGGGAATAAGTCAATTGGTGGATTGAAGTTTGTTACAGTTTGCTATGGAATAGTTGGGTTCATTAAATTTTTGGGGCCTTATTACATGCTGCTGATA ACTCAAAGAAGGAAGATTGGTGCTATTTGCGGCCACCCAATCTATGCAATCACCAGGAGCGAGATGATTCCAGTTCCTGTCCGGTCTAATATGACTAATT CTAAGAATGAGAACAGATACAAGAAGCTTCTTTGCTCGGTGGATCTTACAAGGGACTTCTTTTTCAGCTATTCATACAACATTATGCATAGTCTTCAAAA GAATTTATGTAATAATGAGACAGGAAAGCTCCATTACGAGACCATGTTCGTCTGGAATGAATTCTTAACTCGCGGGATTAGGGACAGCCTCCAAAGTTCT ACCTGGACAGTAGCACTTGTACATGGATTCTTTAAACAGGTCAAGCTATCAATATCCGAGAGGGACTTTAAGCTGACTCTTATTGCTAGAAGGTCACGTC ATTATGCTGGAACCAGATATTTAAAGCGCGGAGTAAATGAGAAAGGAAGGGTTGCTAATGATGTTGAGACTGAACAAATCGTGTTTGAAGATTCTCCCAA AGGGTTTCCAGTGCAATTAAGTTCTGTTGTCCAGAATCGGGGGTCAATCCCACTTTTCTGGTCCCAGGAGACTTCAAGATTAAATATCCGACCAGATATT ACACTGTCAAAGAAGGATAAAAACTATGAAGCCACCAAGCTTCATTTTGAAAATCTTGCCAAGAGATATGGGAATCCAATCATCATTTTGAATCTAATTA AGACACATGAAACAAGGCCTCGAGAAAGTATCCTTCGTGCAGAGTTTGCAAGTGCTATCAGGTTTATCAATACTAGTTTACCGAAAGAAGATCGTCTAAG ATTTCTCCACTGGGATCTGAATAAACATTCTAGAAGAGGTACCAACGTACTGTCACTTCTAGGAAGAGTGGCTGCATATGCTTTGAACTTGACTGGCATC TTCTATTGTAATGTCTTATCGAGTCCCGGACCTGATGGATTGCCGTGCCAGACGTTAGAGAAAATTGAGGGTTGCTCGAAGGAAAATCCTGTCGGTGAAT GTGACAATTTGAGTGACAGTGCCTCAGGAACCAACTCTAATAGCGATGGTAAAGAAAGTTATAGGGACAAAGAGCCAACTCTTCAAACGGGAGTCTTAAG GACCAACTGTATTGACTGTTTGGATCGCACAAATGTTGCTCAATATGCTTATGGCTTGGCGGCTCTAGGAAGGCAGCTCGATGCACTTGGATATATGGAG TCCCCAAACATTGACCTGGATAACCCACTGGCAGAGAACTTGATGCGCCTATATGAATCAATGGGTGACACCCTTGCACACCAATATGGCGGGTCCGCTG CTCACAATAAGATATTTTCTGAAAGAAGAGGTCAATGGAAAGCTGCAACTCAGTCCCAAGAGTTCTTTAGAACTCTCCAGAGATATTACAGCAATGCATA TGTGGACGCTCAAAAACAAGACGCCATTAATGTGTTCTTGGGCCACTTTCAACCTCAGCAAGGAAAGCCAGCTCTGTGGGAATTGGACTCGGATAACCAT TACAATATAGGAGGGCGTAATCCTGATTTATTCGTATCGGAATCCAGGTCATTATTTAAAAGATCAATGTCAGATGGCAATCTACTCTTTGACAATGAAA ATGACTCGCTTGATGTTCCTACCAGAATTGGACAAAATATGCTGACTGATAAGCAACGGGGAGTTGATAAGGGTCTTTCAGACTCCAGTCCAGAGATCTC AACTTGTGATAGTGATATGTCCTTCTCAAGGTTTACTCCATCGATGATTCCCAAGCAGCTCTTTGAAGAAGTAGAGGAAGACCAACGGGATCGCATTTGT TATGACGAACATGGGGATGCTTGTAGCTGCTCGAATTTTCTCGACTTGGACTGGCTTTCTTCATCAGAAGTTTCATGTGAAGAAGATCCAAGCGACAGGT CGATTGCCGGTCTATCTTCTGAGTATCTTGTGAATGAGGTCAGAACAGAGACGTCGTTAGCTGCAGCAAGCGAGGCCGGGTCTAGCTTGAAGGGAGGTTA CCAAGCAGGAAGCAGTGAAATCGGGTGCAATGAGTTGCCCGGGTACTCGCAGCGGTTTGTACACTGGGTGAACGACGGTGTGACGTTGTTTCACTGA
AA sequence Show only first row Show all	>Lus10037446 pacid=23167316 polypeptide=Lus10037446 locus=Lus10037446.g ID=Lus10037446.BGIv1.0 annot-version=v1.0 MVNSSALLPPNPPISRSDSSVSSSGSPLHFPLLQDHRLDSFLFSVCVCFRAEEEKGRVFSISRSCISICGGGEELTLWGFLGAEEEDLVTMDMETSLPSM APSNLVYLQKFRLYETPLHFYMIGRDKSRTFWKVLKIDRSDPSELNIVEDSTSYSESECCELLRRIHEGNKSIGGLKFVTVCYGIVGFIKFLGPYYMLLI TQRRKIGAICGHPIYAITRSEMIPVPVRSNMTNSKNENRYKKLLCSVDLTRDFFFSYSYNIMHSLQKNLCNNETGKLHYETMFVWNEFLTRGIRDSLQSS TWTVALVHGFFKQVKLSISERDFKLTLIARRSRHYAGTRYLKRGVNEKGRVANDVETEQIVFEDSPKGFPVQLSSVVQNRGSIPLFWSQETSRLNIRPDI TLSKKDKNYEATKLHFENLAKRYGNPIIILNLIKTHETRPRESILRAEFASAIRFINTSLPKEDRLRFLHWDLNKHSRRGTNVLSLLGRVAAYALNLTGI FYCNVLSSPGPDGLPCQTLEKIEGCSKENPVGECDNLSDSASGTNSNSDGKESYRDKEPTLQTGVLRTNCIDCLDRTNVAQYAYGLAALGRQLDALGYME SPNIDLDNPLAENLMRLYESMGDTLAHQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYVDAQKQDAINVFLGHFQPQQGKPALWELDSDNH YNIGGRNPDLFVSESRSLFKRSMSDGNLLFDNENDSLDVPTRIGQNMLTDKQRGVDKGLSDSSPEISTCDSDMSFSRFTPSMIPKQLFEEVEEDQRDRIC YDEHGDACSCSNFLDLDWLSSSEVSCEEDPSDRSIAGLSSEYLVNEVRTETSLAAASEAGSSLKGGYQAGSSEIGCNELPGYSQRFVHWVNDGVTLFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	0	1
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	1.4	0.9093
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	4.0	0.9067
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	4.5	0.8909
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	6.0	0.8802
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	6.0	0.8744
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	7.1	0.8953
AT5G01450			RING/U-box superfamily protein...		Lus10002487 [exp]	7.5	0.8752
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	8.4	0.8898
AT3G26730			RING/U-box superfamily protein...		Lus10035163 [exp]	9.6	0.8451
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024112 [exp]	10.2	0.8486

Compare expression of checked genes

Lus10037446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.