Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53920 399 / 6e-138 GLIP5 GDSL-motif lipase 5 (.1) AT1G53940 305 / 1e-100 GLIP2 GDSL-motif lipase 2 (.1) AT5G40990 299 / 6e-99 GLIP1 GDSL lipase 1 (.1) AT3G14225 285 / 1e-93 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT1G53990 275 / 9e-90 GLIP3 GDSL-motif lipase 3 (.1) AT1G71120 177 / 1e-51 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT1G54030 174 / 2e-50 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 164 / 4e-47 GLIP7 GDSL-motif lipase 7 (.1) AT1G06990 158 / 1e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G22810 152 / 1e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 709 / 0 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10028423 [exp] 165 / 3e-47 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003722 [exp] 164 / 6e-47 AT5G42170 298 / 3e-99 SGNH hydrolase-type esterase superfamily protein (.1) Lus10003723 [exp] 161 / 5e-46 AT5G42170 308 / 1e-103 SGNH hydrolase-type esterase superfamily protein (.1) Lus10041877 [exp] 160 / 1e-45 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 160 / 3e-45 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10013956 [exp] 158 / 1e-44 AT5G45950 432 / 6e-152 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 158 / 3e-44 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005279 [exp] 156 / 8e-44 AT5G45950 427 / 4e-150 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071500 [exp] 398 / 9e-138 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.003G071400 [exp] 324 / 9e-109 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.013G065100 [exp] 311 / 6e-104 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.018G063901 [exp] 287 / 4e-94 AT1G53920 302 / 4e-100 GDSL-motif lipase 5 (.1) Potri.017G134701 [exp] 273 / 3e-89 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G136601 [exp] 260 / 2e-83 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G134601 [exp] 258 / 4e-83 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.017G136501 [exp] 254 / 4e-81 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.017G137000 [exp] 254 / 5e-81 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1) Potri.004G084500 [exp] 247 / 1e-78 AT5G40990 288 / 5e-95 GDSL lipase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10037447 pacid=23167047 polypeptide=Lus10037447 locus=Lus10037447.g ID=Lus10037447.BGIv1.0 annot-version=v1.0 ATGAACGAACCAAATCACCAAACTTGGTTACAAATAGCAGTACTAGCATTTCTCCTCACCTCTGCAACCTGCAGAGGAACAGAGTACTCCGCCGCCGTCG GCCGGAAAAAACAGAGCAAAGTCGTCGGGTTCTTCTTGTTCGGAGACTCGTTCCTCGACGCGGGAAACAACAACTACATCAACACCACAACGCTCGACCA AGCCAACTTCTGGCCTTACGGCGAAACCTTCTTCCACTTCCCCACCGGCCGCTTCTCCGACGGTCGTCTCCTCTCCGACTTCATTGCGGAATATGCGAAG CTGCCGTTGATTCCGCCGTTTTTGCGGCCGGGGAACAGAGTCAACGACATGGCGGTCGGAGTCAACTTCGCGTCCGCCGGCGCCGGCGCTCTTGTCGACA CTTTCCGTGGAGATGTGATTGATCTAAAGACACAGTTGGGGAACATAAAGAAGGTGGAGAAATGGTTGGAGAAGAAGCTGGGGAAAGAGGAGACAAAGGG CAGAGTATCAAGAGCAGTTTACATGTTCAGCATTGGAACCAATGATTACATAAGCCCTTTCTTCACCAATTCCTCTGTTTCTTCTTCTTCAAGCTCCAGA TTTGTTGCCATGGTGCTTGCCAATCTCACTGCAGTTGTCAAAGAGATATATGAGATGGGAGGGAGGAAGTTTGTGTTCATGAATGTGCCAACATTGGGTT GTCTACCAGCAATGAGACTACTGAACAAACACAGTGGAAAATCAAAGTGCTGGGAGGAGCAAGTTTCAGAGTTGGCAAAGCTACACAATGATGCTCTTTC CACACTTGTTCTTCCCCAACTCACTAGGGAGCTCAGAGGGTTCAAATACTCACTCTTTGATTTCAGCACAAGCCTCCACCTCAGGATGACCCATCCTTCC AACTATGGGTTGAAGGAAGGTGAGGAGGCGTGTTGCGGGATAGGGGAATGGGGAGGCGTTTATAGCTGCGGAGGTAAAAGACCGGTGAAAGAGTTTAGAG TTTGCCAGCATCCTTACGAGTATGTCTTCTGGGACTCTTTCCATCTCACTGAAAAGGTTTACAAACAAATGGCGGCTGAGATATGGAATCCTCCACCGCT TTCCTCCGCCGGCGACGCCAACTCTCCGGCCAATGTCACCATCATTGGCCCTTACACTCTCCACCAACTCTTCCACAGCTAG
AA sequence Show only first row Show all	>Lus10037447 pacid=23167047 polypeptide=Lus10037447 locus=Lus10037447.g ID=Lus10037447.BGIv1.0 annot-version=v1.0 MNEPNHQTWLQIAVLAFLLTSATCRGTEYSAAVGRKKQSKVVGFFLFGDSFLDAGNNNYINTTTLDQANFWPYGETFFHFPTGRFSDGRLLSDFIAEYAK LPLIPPFLRPGNRVNDMAVGVNFASAGAGALVDTFRGDVIDLKTQLGNIKKVEKWLEKKLGKEETKGRVSRAVYMFSIGTNDYISPFFTNSSVSSSSSSR FVAMVLANLTAVVKEIYEMGGRKFVFMNVPTLGCLPAMRLLNKHSGKSKCWEEQVSELAKLHNDALSTLVLPQLTRELRGFKYSLFDFSTSLHLRMTHPS NYGLKEGEEACCGIGEWGGVYSCGGKRPVKEFRVCQHPYEYVFWDSFHLTEKVYKQMAAEIWNPPPLSSAGDANSPANVTIIGPYTLHQLFHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Lus10037447 [exp]	0	1
AT2G32800		AP4.3A	protein kinase family protein ...		Lus10016674 [exp]	3.5	0.8641
AT1G27100			Actin cross-linking protein (....		Lus10036693 [exp]	10.6	0.8199
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	11.1	0.7905
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	13.9	0.7773
AT5G23850			Arabidopsis thaliana protein o...		Lus10008017 [exp]	16.7	0.7488
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	17.9	0.7805
AT1G70530		CRK3	cysteine-rich RLK (RECEPTOR-li...		Lus10013040 [exp]	19.0	0.8000
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	21.3	0.7781
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10017510 [exp]	26.0	0.7782
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	29.1	0.7551

Compare expression of checked genes

Lus10037447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.