Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14240 1121 / 0 Subtilase family protein (.1) AT4G34980 749 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 701 / 0 ARA12 Subtilase family protein (.1) AT2G05920 676 / 0 Subtilase family protein (.1) AT3G14067 657 / 0 Subtilase family protein (.1) AT5G51750 649 / 0 ATSBT1.3 subtilase 1.3 (.1) AT1G04110 585 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 555 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 523 / 4e-175 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 512 / 7e-171 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013187 [exp] 1424 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 687 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 685 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10011089 [exp] 679 / 0 AT5G67360 1108 / 0.0 Subtilase family protein (.1) Lus10019285 [exp] 654 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 647 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10041382 [exp] 646 / 0 AT1G01900 825 / 0.0 subtilase family protein (.1) Lus10036546 [exp] 645 / 0 AT1G01900 822 / 0.0 subtilase family protein (.1) Lus10011537 [exp] 639 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G071800 [exp] 1152 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 1149 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 788 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.009G133400 [exp] 779 / 0 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.006G141200 [exp] 691 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 689 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.015G133800 [exp] 680 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.005G145300 [exp] 667 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 664 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 653 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10037449 pacid=23167320 polypeptide=Lus10037449 locus=Lus10037449.g ID=Lus10037449.BGIv1.0 annot-version=v1.0 ATGGCGTATTCTTCTCCCTTCTTCATCATCATCATCATCTTCCTCGCCTCAATCTCTTCTTCCTCCGCCATTAACAACGACACTCCGACGACCTTCATCG TCGCCGTCGAACCAGACTCCAAACCTTCAATCTTCCCTACTCATTCCCACTGGTACGAATCCTCCCTCGCCTCCCTCTTCCCCGGCCAAAACCAACCTTC CCTCATCCACACCTACTCCGGCGCCGTTTTCCATGGCTTCTCCGTCAAGCTCTCACCTTCACAGTCCCTCCTCCTCCGCTCCCTCCCTCACGTCCTCTCA ATAATCCCCGACCGCCGCCGCCAGCTCCACACCACCCGCTCCCCTGAGTTCCTCGGTCTGATCTCCACCGACCCCGCCGGCCTCCTCAAGGAATCAGATT TCGGCTCCGACCTTATCATCGCCGTCATCGACACTGGCATCTCCCCTAACCATCCTTCTTTCCACGACCGCGACCTCCCTCCCGTACCTCTCAAATGGAA GGGATCTTGCTCCCCAGCTCCCGATTTCCCTCCTTCCTCCTGCAATCGGAAGCTCGTCGGCGCCAGATTCTTCTCCGCTGGGTATGAAGCCACTAACGGG AAAATGAACGAGACTTCCGAGTTCCGTTCCCCTCGTGATTCCGACGGTCACGGTACTCACACTGCTTCAATCGCCGCTGGCCGCTACGTTTTCCCCGCTT CCACTCTCGGGTACGCTCGTGGACTCGCTGCTGGTATGGCTCCTAAAGCTAGACTCGCTGTCTATAAAGTCTGCTGGACTGCTGGCTGCTACGATTCCGA TATCCTCGCTGCGTTCGACGCCGCCGTCACCGACGGCGTCGACGTCATTTCTCTCAGCGTCGGTGGAGTTGTGGTGCCGTACTATCTCGACGCAATCTCG ATCGGCGCGTTCGGAGCTGTGGACCGCGGGATCTTCGTCTCGGCTTCTGCTGGAAATGGTGGCCCCGGTGGGCTCACCGTCACGAACGTTTCTCCCTGGG TCGCCACTGTTGGCGCTGGAACTCTAGATCGCGATTTCCCTGCCGATGTCAAGCTAGGGAACGGGAAGGTGATTCCTGGAATGAGTGTTTACGGAGGTCC AGGGTTAGCTCCGGGGAAGACTTATCCGTTAATCTACGCCGGATCTCAAGGCGGTGGAGGCGGAGGAGGCGCCGGAGGAGATGGATACTCGAGCTCGCTC TGTCTGGAAGGTTCGTTGGATCCGAAAATGGTGAAGGGCAAAATCGTAATGTGCGATCGAGGAATCAATTCCAGAGCTGCTAAAGGAGAAGTGGTGAAGA AAGCCGGCGGAGTCGGAATGATTTTAGCTAACGGAGTCTTCGACGGCGAAGGATTGGTAGCCGATTGCCATGTACTTCCCGCCACCGCCATCGGCGCTTC CGGCGGCGACGAAATCAGAAGGTACATTTCAAATTCAACTCCTAATTCGCCGATTCCGACCGGTACAATCGAATTCAAAGGAACTCGATTAGGGATTAAG CCAGCTCCGGTGGTAGCTTCCTTCTCAGCCAGAGGTCCAAATCCTGAATCCCCTGAAATTCTGAAACCTGACATTATAGCTCCAGGGTTGAACATTCTCG CCGCTTGGCCCGATCGAGTTTCGCCTTCTGGGATTCTTTCCGATTCTCGACGAACCGATTTCAACATTCTGTCCGGAACATCTATGGCTTGCCCTCACGT ATCCGGATTAGCCGCATTGCTGAAAGCAGCTCATCCGGAATGGTCCCCTGCAGCTATCAAGTCAGCTCTGATGACAACCGCTTACACGGTAGATAACCGA TTCGAAACAATGCTTGATGAATCGACTGGAAATTCCTCCACGGTTCTTGATTTCGGATCCGGTCATGTCCACCCTCAGAACGCGATGGATCCGGGGCTAG TATACGATATCTCGAGTTTTGATTACATCGATTTCCTTTGCAATTCCAATTACACCGTGGAGAATGTACGAGTCGTGACTCGAAAGCAGAATGTAGACTG CAACGGAGCGAAAAAGGCGGGACATGCCGGGAACCTGAACTACCCTTCGATGGCGGTTGTGTTTCAGCAGTACGGGAAGAGGAAGATGTCGAGCCATTTC ATTCGAACGGTGACGAATGTTGGATCGGGGGAAGGCGGGAATGCGGTTTACGAGGTTAAGGTCAGGGCGCCGAAGGGGGTCGAGGTGAGTGTTGAGCCGG AGAAGCTGGTGTTCAGGAGGGTTGGGCAGAAGCTGAACTTTTTGGTCCGGGTTGCGACGAGGGAGGTGAAGCTTTCGCCGGGGGGTTCGAGGGTGGAGAG TGGGTTTATAGTGTGGAGCGATGGGAAGCATAATGTGACTAGTCCAATTGTTGTGACGTTGCAGCAACCTTTGCAGTGA
AA sequence Show only first row Show all	>Lus10037449 pacid=23167320 polypeptide=Lus10037449 locus=Lus10037449.g ID=Lus10037449.BGIv1.0 annot-version=v1.0 MAYSSPFFIIIIIFLASISSSSAINNDTPTTFIVAVEPDSKPSIFPTHSHWYESSLASLFPGQNQPSLIHTYSGAVFHGFSVKLSPSQSLLLRSLPHVLS IIPDRRRQLHTTRSPEFLGLISTDPAGLLKESDFGSDLIIAVIDTGISPNHPSFHDRDLPPVPLKWKGSCSPAPDFPPSSCNRKLVGARFFSAGYEATNG KMNETSEFRSPRDSDGHGTHTASIAAGRYVFPASTLGYARGLAAGMAPKARLAVYKVCWTAGCYDSDILAAFDAAVTDGVDVISLSVGGVVVPYYLDAIS IGAFGAVDRGIFVSASAGNGGPGGLTVTNVSPWVATVGAGTLDRDFPADVKLGNGKVIPGMSVYGGPGLAPGKTYPLIYAGSQGGGGGGGAGGDGYSSSL CLEGSLDPKMVKGKIVMCDRGINSRAAKGEVVKKAGGVGMILANGVFDGEGLVADCHVLPATAIGASGGDEIRRYISNSTPNSPIPTGTIEFKGTRLGIK PAPVVASFSARGPNPESPEILKPDIIAPGLNILAAWPDRVSPSGILSDSRRTDFNILSGTSMACPHVSGLAALLKAAHPEWSPAAIKSALMTTAYTVDNR FETMLDESTGNSSTVLDFGSGHVHPQNAMDPGLVYDISSFDYIDFLCNSNYTVENVRVVTRKQNVDCNGAKKAGHAGNLNYPSMAVVFQQYGKRKMSSHF IRTVTNVGSGEGGNAVYEVKVRAPKGVEVSVEPEKLVFRRVGQKLNFLVRVATREVKLSPGGSRVESGFIVWSDGKHNVTSPIVVTLQQPLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14240			Subtilase family protein (.1)		Lus10037449 [exp]	0	1
AT3G14240			Subtilase family protein (.1)		Lus10013187 [exp]	1.0	0.9512
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	1.7	0.9009
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	2.4	0.9106
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009565 [exp]	2.8	0.8979
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	4.2	0.8889
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	4.6	0.8887
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	5.7	0.8868
AT3G14240			Subtilase family protein (.1)		Lus10017301 [exp]	6.2	0.8797
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10022418 [exp]	7.1	0.8741
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020416 [exp]	7.7	0.8961

Compare expression of checked genes

Lus10037449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.