Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53900 487 / 4e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53880 487 / 4e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G72340 479 / 6e-172 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT3G07300 95 / 3e-22 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) AT2G44070 81 / 2e-17 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT1G48970 76 / 3e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT5G38640 75 / 3e-15 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G05830 69 / 2e-13 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003938 [exp] 539 / 0 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Lus10002762 [exp] 94 / 1e-21 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10016349 [exp] 91 / 7e-21 AT3G07300 624 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Lus10038944 [exp] 79 / 2e-16 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10027234 [exp] 78 / 6e-16 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10001970 [exp] 69 / 4e-13 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4) Lus10008417 [exp] 67 / 1e-12 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072100 [exp] 509 / 0 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.001G163300 [exp] 505 / 0 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) Potri.003G199301 [exp] 98 / 2e-23 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.T126106 [exp] 98 / 3e-23 AT3G07300 595 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.001G026100 [exp] 97 / 5e-23 AT3G07300 632 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.010G068600 [exp] 88 / 1e-19 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3) Potri.004G103700 [exp] 82 / 2e-17 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.017G111800 [exp] 78 / 4e-16 AT5G38640 775 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.012G059300 [exp] 74 / 8e-15 AT5G38640 693 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1) Potri.006G219900 [exp] 71 / 4e-14 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [flax] [poplar] ISOCOT_Fold PF01008 [flax] [poplar] IF-2B Initiation factor 2 subunit family
Representative CDS sequence Show only first row Show all	>Lus10037451 pacid=23167007 polypeptide=Lus10037451 locus=Lus10037451.g ID=Lus10037451.BGIv1.0 annot-version=v1.0 ATGATGGAGCTCGAGATTGAGCTTAAGACGGCCTCTGATTCCCTCAAAGCATGGGACACGACATCGATCTCTTTAACAGCGGGATGCGATTTGTTCCTGC GGTACGTTACAAGGACTTCAGCCTTGGAATACGAGGACTTTGATGCTGCTAAGTCCCGCCTGCTTGAACGTGCTGAGAAGTTCGGAGAGATATCTAACAA GGCACGCAGGATCATTGCGATGCTTAGCCAAGATTTCATCTTTGATGGTTGCACTATTTTGGTGCATGGTTTCTCCAGAGTTGTGTTTGAAGTTCTGAAG ACAGCTGCACATAGTAAAAAACAGTTTCGAGTTTTCTGCACAGAGGGAAGGCCGGACAGATCAGGATTGCGGCTGTCTAACGAACTGGCCAAGCTCAATG TTCCGGTAAAACTCCTTATAGACTCTGCCGTTGCTTATTCTATGGACGAGGTGGACATGGTCTTTGTCGGAGCTGATGGAGTGGTCGAAAGCGGAGGTAT AATCAACATGATGGGGACATATCAGATTGCCCTTGTAGCACACAGCATGAATAAACCGGTTTACGTTGCAGCAGAAAGCTACAAGTTTGCTCGTCTCTAT CCACTGAGCCAGAAGGACATGGAACCGGCATTACGTCCTATAGATTTCGGAGTGCCAATCCCGTCAAAGGTGGAGGTCGAGACATCTGCACGGGATTATA CCCCTCCTCAGTATCTAACTCTCCTGTTCACGGATCTCGGTGTGCTCACGCCTTCGGTGGTCAGCGATGAACTGATTCAGCTCTACTTGTAG
AA sequence Show only first row Show all	>Lus10037451 pacid=23167007 polypeptide=Lus10037451 locus=Lus10037451.g ID=Lus10037451.BGIv1.0 annot-version=v1.0 MMELEIELKTASDSLKAWDTTSISLTAGCDLFLRYVTRTSALEYEDFDAAKSRLLERAEKFGEISNKARRIIAMLSQDFIFDGCTILVHGFSRVVFEVLK TAAHSKKQFRVFCTEGRPDRSGLRLSNELAKLNVPVKLLIDSAVAYSMDEVDMVFVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLY PLSQKDMEPALRPIDFGVPIPSKVEVETSARDYTPPQYLTLLFTDLGVLTPSVVSDELIQLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53900			Eukaryotic translation initiat...		Lus10037451 [exp]	0	1
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	2.2	0.8513
AT5G51740			Peptidase family M48 family pr...		Lus10038897 [exp]	7.1	0.8239
AT3G14460			LRR and NB-ARC domains-contain...		Lus10006793 [exp]	8.4	0.8119
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	10.1	0.8392
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	11.0	0.8333
AT3G11690			unknown protein		Lus10013608 [exp]	11.4	0.7979
AT4G18372			Small nuclear ribonucleoprotei...		Lus10042823 [exp]	11.6	0.7924
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10024896 [exp]	12.0	0.8064
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	13.9	0.8126
AT2G35330			RING/U-box superfamily protein...		Lus10000899 [exp]	14.1	0.7872

Compare expression of checked genes

Lus10037451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.