Plant FIBer expression Database

Lus10037452 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72340 94 / 5e-24 NagB/RpiA/CoA transferase-like superfamily protein (.1)
AT1G53900 89 / 8e-22 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
AT1G53880 89 / 8e-22 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003938
[exp]
124 / 5e-35 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G163300
[exp]
89 / 4e-22 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Potri.003G072100
[exp]
83 / 7e-20 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10037452 pacid=23167251 polypeptide=Lus10037452 locus=Lus10037452.g ID=Lus10037452.BGIv1.0 annot-version=v1.0
ATGATGTGGAAGAGAACGGCCTCTTTCATCCTCGACAACCGCCAAAAACCACCGCACCCGCCATACGACGCCGCAGAAGTCGTCTCCCGCTCTTCTCGAC
CACCTCCTTCCACATCCATGGCCGATCCCAGCCCTAACCCAGCCGCCAAAATCTCCGCTTACTACCAGGCCCGCGCCGCCCACCACGGCGTCATCTCCAG
CGACTGGCTCGCCCAGGCCCAGGCCGCCGTCGGCACCCATCCCGACGCCCCCGACGGAGACGACGATAAACCTCAGGGCCCTCCTATTGACAAGCCGTTC
AGCGTCATAGACGAGTTCAATAATTGGCGCAAGCAGCCTGATGGTTTTTAA
AA sequence
>Lus10037452 pacid=23167251 polypeptide=Lus10037452 locus=Lus10037452.g ID=Lus10037452.BGIv1.0 annot-version=v1.0
MMWKRTASFILDNRQKPPHPPYDAAEVVSRSSRPPPSTSMADPSPNPAAKISAYYQARAAHHGVISSDWLAQAQAAVGTHPDAPDGDDDKPQGPPIDKPF
SVIDEFNNWRKQPDGF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G53900 Eukaryotic translation initiat... Lus10037452
[exp]
0 1
AT2G28380 DRB2 dsRNA-binding protein 2 (.1) Lus10021471
[exp]
2.2 0.8234
AT3G47620 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea ... Lus10013814
[exp]
6.3 0.7760
AT1G65720 unknown protein Lus10020795
[exp]
11.6 0.7381
AT5G18110 NCBP novel cap-binding protein (.1) Lus10020282
[exp]
17.7 0.7119
AT2G45590 Protein kinase superfamily pro... Lus10036533
[exp]
18.2 0.7335
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10022023
[exp]
22.1 0.7639
AT2G31160 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSIT... Lus10024901
[exp]
22.2 0.7670
AT4G22720 Actin-like ATPase superfamily ... Lus10029108
[exp]
22.8 0.7260
AT3G13677 unknown protein Lus10015813
[exp]
27.3 0.7117
AT2G29380 HAI3 highly ABA-induced PP2C gene 3... Lus10003887
[exp]
32.7 0.7221

Lus10037452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.