Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14280 52 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003937 [exp] 241 / 4e-83 AT3G14280 57 / 9e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163100 [exp] 85 / 9e-22 AT3G14280 69 / 2e-15 unknown protein Potri.003G072400 [exp] 84 / 2e-21 AT3G14280 83 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037453 pacid=23167305 polypeptide=Lus10037453 locus=Lus10037453.g ID=Lus10037453.BGIv1.0 annot-version=v1.0 ATGGCTGCAGTACCAGTCAAAACATGCTTCCTGAAACTGCAAACCTCTGGTTCTTCGGTTCCAAAGCGGCGTACAGTCAGAGGATGCTGCAGAAGCAAAG CACCTAAACCGGCAAGGATCGTGATCAGATGTTCATCTTATCCTTCATCCAGCTTCGAGAACCCGGTTGAGGGGATAGTTTGTTACAGAGATGCAAGAAC AGGGGAGATTGTTTGCGAAGGATACGACGAAGGGCCTCGTTTCGAACACCGGCAGCAGAAGGTTCCTCTGGCATACAAACATCATTCAACAAGGGATGGG GAGATAGTGATGAACCTCCTTCAGCAGCGGCTGCTACAGATTGTTAATGGCAGTGATCAGTTTGAAGCTACTACAGCAGCAGCAGTTATGCCCTTGCAAG AAGACCTTTCAAACTTCAAATCATATTAG
AA sequence Show only first row Show all	>Lus10037453 pacid=23167305 polypeptide=Lus10037453 locus=Lus10037453.g ID=Lus10037453.BGIv1.0 annot-version=v1.0 MAAVPVKTCFLKLQTSGSSVPKRRTVRGCCRSKAPKPARIVIRCSSYPSSSFENPVEGIVCYRDARTGEIVCEGYDEGPRFEHRQQKVPLAYKHHSTRDG EIVMNLLQQRLLQIVNGSDQFEATTAAAVMPLQEDLSNFKSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14280			unknown protein		Lus10037453 [exp]	0	1
AT5G43180			Protein of unknown function, D...		Lus10025217 [exp]	1.0	0.8923
AT3G07720			Galactose oxidase/kelch repeat...		Lus10006392 [exp]	3.2	0.8454
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	3.5	0.8827
AT4G13530			unknown protein		Lus10041074 [exp]	3.7	0.8831
AT3G47160			RING/U-box superfamily protein...		Lus10011390 [exp]	5.3	0.8503
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	6.3	0.8360
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	8.8	0.8313
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	9.9	0.8384
AT3G22490			Seed maturation protein (.1)		Lus10042604 [exp]	10.4	0.8329
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10020927 [exp]	10.7	0.7841

Compare expression of checked genes

Lus10037453 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.