Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14290 461 / 8e-162 PAE2 20S proteasome alpha subunit E2 (.1) AT1G53850 461 / 1e-161 PAE1, ATPAE1 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) AT3G22110 178 / 7e-52 PAC1 20S proteasome alpha subunit C1 (.1) AT1G53860 173 / 8e-48 Remorin family protein (.1) AT1G16470 158 / 1e-44 PAB1 proteasome subunit PAB1 (.1.2) AT1G79210 158 / 2e-44 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT5G66140 156 / 1e-43 PAD2 proteasome alpha subunit D2 (.1) AT3G51260 155 / 2e-43 PAD1 20S proteasome alpha subunit PAD1 (.1.2) AT5G42790 148 / 2e-40 ARS5, ATPSM30, PAF1 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) AT1G47250 147 / 5e-40 PAF2 20S proteasome alpha subunit F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003936 [exp] 897 / 0 AT1G53850 463 / 9e-162 ARABIDOPSIS 20S PROTEASOME ALPHA SUBUNIT E1, 20S proteasome alpha subunit E1 (.1.2) Lus10042145 [exp] 179 / 5e-52 AT3G22110 474 / 3e-172 20S proteasome alpha subunit C1 (.1) Lus10004235 [exp] 166 / 8e-48 AT3G22110 375 / 2e-134 20S proteasome alpha subunit C1 (.1) Lus10041890 [exp] 158 / 2e-44 AT5G66140 442 / 9e-160 proteasome alpha subunit D2 (.1) Lus10028437 [exp] 152 / 4e-42 AT5G66140 417 / 8e-150 proteasome alpha subunit D2 (.1) Lus10017135 [exp] 151 / 6e-42 AT1G16470 454 / 1e-164 proteasome subunit PAB1 (.1.2) Lus10036210 [exp] 149 / 5e-41 AT1G16470 450 / 3e-163 proteasome subunit PAB1 (.1.2) Lus10007396 [exp] 145 / 4e-39 AT5G42790 442 / 8e-159 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1) Lus10024269 [exp] 143 / 1e-38 AT5G42790 440 / 4e-158 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162900 [exp] 464 / 5e-163 AT3G14290 471 / 4e-171 20S proteasome alpha subunit E2 (.1) Potri.003G072500 [exp] 458 / 1e-160 AT3G14290 464 / 1e-168 20S proteasome alpha subunit E2 (.1) Potri.001G163000 [exp] 229 / 3e-68 AT1G53860 333 / 6e-110 Remorin family protein (.1) Potri.006G008800 [exp] 178 / 1e-51 AT3G22110 452 / 1e-163 20S proteasome alpha subunit C1 (.1) Potri.016G015400 [exp] 174 / 2e-50 AT3G22110 445 / 1e-160 20S proteasome alpha subunit C1 (.1) Potri.012G123550 [exp] 155 / 2e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.015G122400 [exp] 155 / 2e-43 AT1G16470 456 / 1e-165 proteasome subunit PAB1 (.1.2) Potri.009G133800 [exp] 151 / 6e-42 AT5G66140 409 / 2e-146 proteasome alpha subunit D2 (.1) Potri.004G174200 [exp] 150 / 1e-41 AT3G51260 406 / 2e-145 20S proteasome alpha subunit PAD1 (.1.2) Potri.002G033900 [exp] 148 / 2e-40 AT5G42790 449 / 1e-161 ARSENIC TOLERANCE 5, proteasome alpha subunit F1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit CL0052 [flax] [poplar] NTN PF10584 [flax] [poplar] Proteasome_A_N Proteasome subunit A N-terminal signature CL0052 [flax] [poplar] PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10037454 pacid=23167002 polypeptide=Lus10037454 locus=Lus10037454.g ID=Lus10037454.BGIv1.0 annot-version=v1.0 ATGGGACGACGCCCAGAAGTGGCTTGTAGCTTCCCCTGCCCATCCCCTTCACCACCACCGTCCATTGCCGCCTCGCAAACAACTCATCTCTACCCCCGCC GGCTCTTCTCCGGCCGACCTCTACCGCCCCGATTCGCTTCCCAAAGCTGCGTAAAGCTACAGGCTTTCTATAAGTTCACAGATGATGCTGAGACAGTCTT CCCCAGGTTGAAGAACTCGGAGCCATGTAATAAAGAAGGGTTCTTGTTCAGGAACATGAAAGATTACGACGTCAAAACGACGATGAATGATGGTGAAAAC GACAGTTCTATGGTGAAGCACAAAGATGTAGGGACGGAGATGACTCCATTGGGAAGTTCAACCACTTCCAGATGCCACACTCCTTTCAGCATCTCCTCGC CTGCCCGGCACAACACGCCTGCCAATCGGTCGGGGCCATTGGCTGCGATTAAACCGAACTCGGCGAGCGTGAGCAACGATAGTAGCAGTATGGACATATC GCAGTTGCGGGACTGCCATTTGGCTAAGCTCCAGTTCGACCCCGTTGGGTCAAACTGGAGCTCGAAGGAGGACGAGGAGGAGGAGGTGTCGAAGAGCTTG AGGCATTTCGAGATGGGGAGGAGCAGTAGCGTCTCGGATGGGAGAGCGGCTGCTGCTCTGGCTTGGGAGGAAGAGGAGAAGACCAAATGGTGCCTCAGAT ACGATAGGGAAGAAGCAAGGATTCAAGCATGGGTGAACCTGGAGAGTGCAAAAGCAGAAGCTCAGTCAAGAAAGCTAGAGGTGAAGATACAGAAGATGAG ATCAAGCTTGGAGGAGAAGTTGATGAAGAGGATGATGATCGTTCGAAAGAAAGCAGAGGAACAGAGAGCTGCGGCTCTACAGCAGCATACCCAACACATT CACCTCACCACACAACATGCCCGCAAGATGATCACAACCACCACCGCCACTAACCACCCTAATCCTCCTTCTCCGGCGACCGGCGTCGCCGTCACGGCCG CCAATCGTAGTAATGGGAAATTTATATACGCTTCTACCACTACTGCTTCTTGTGGCTGTCTCCCCTGTAATAGCCTCATTAAGACCGAGTATGACAGAGG AGTCAACACTTTCTCTCCTGAAGGCCGACTCTTCCAGGTCGAGTATGCTATCGAAGCCATCAAGCTTGGTTCTACTGCAATTGGATTGAAGACGAAGGAA GGAGTTGTGCTTGCAGTTGAGAAGCGTATCACTTCACCACTCCTGGAGCCCAGTAGTGTTGAGAAAGTCATGGAGATCGATCAGCATATAGGGTGTGCTA TGAGTGGATTGATTGCAGATGCTCGTACTCTTGTTGAGCATGCTCGTGTTGAGACTCAGAGTCATAGATTTTCCTATGGTGAGCCAATGACTGTGGAGTC TACAACACAAGCTCTATGCGATCTAGCCCTAAGATTTGGTGAAGGTGATGAAGAGTCTATGTCTCGACCCTTTGGGGTGTCCCTTCTCATTGCTGGTCAT GATGAGAATGGTCCAAGCTTGTACTATACGGATCCATCTGGCACATTTTGGCAATGCAACGCCAAGGCTATTGGTTCAGGTTCGGAAGGTGCAGATAGCT CTCTGCAAGAGCAATACAACAAGGACCTTACTCTTCTGGAAGCTGAAACTATAGCGCTTTCCATTCTAAAGCAAGTTATGGAGGAAAAGGTAACACCCAA CAACGTCGACATCGCGAAAGTGTCTCCGACGTACCATTTGTACACTCCAGCAGAGGTGGAAGCTGTCATCGGCCGCCTGTGA
AA sequence Show only first row Show all	>Lus10037454 pacid=23167002 polypeptide=Lus10037454 locus=Lus10037454.g ID=Lus10037454.BGIv1.0 annot-version=v1.0 MGRRPEVACSFPCPSPSPPPSIAASQTTHLYPRRLFSGRPLPPRFASQSCVKLQAFYKFTDDAETVFPRLKNSEPCNKEGFLFRNMKDYDVKTTMNDGEN DSSMVKHKDVGTEMTPLGSSTTSRCHTPFSISSPARHNTPANRSGPLAAIKPNSASVSNDSSSMDISQLRDCHLAKLQFDPVGSNWSSKEDEEEEVSKSL RHFEMGRSSSVSDGRAAAALAWEEEEKTKWCLRYDREEARIQAWVNLESAKAEAQSRKLEVKIQKMRSSLEEKLMKRMMIVRKKAEEQRAAALQQHTQHI HLTTQHARKMITTTTATNHPNPPSPATGVAVTAANRSNGKFIYASTTTASCGCLPCNSLIKTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKE GVVLAVEKRITSPLLEPSSVEKVMEIDQHIGCAMSGLIADARTLVEHARVETQSHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGH DENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLLEAETIALSILKQVMEEKVTPNNVDIAKVSPTYHLYTPAEVEAVIGRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10037454 [exp]	0	1
AT5G14050			Transducin/WD40 repeat-like su...		Lus10038375 [exp]	2.4	0.9535
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	3.2	0.9543
AT2G43770			Transducin/WD40 repeat-like su...		Lus10012230 [exp]	3.5	0.9494
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	3.5	0.9539
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	5.2	0.9278
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10027873 [exp]	6.3	0.9313
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10034676 [exp]	7.7	0.9363
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	8.6	0.9239
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	9.2	0.9373
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	9.5	0.9475

Compare expression of checked genes

Lus10037454 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.