Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72330 854 / 0 ALAAT2 alanine aminotransferase 2 (.1.2.3) AT1G17290 839 / 0 ALAAT1 alanine aminotransferas (.1) AT1G23310 489 / 6e-170 GGAT1, AOAT1, GGT1 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 1, ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1, glutamate:glyoxylate aminotransferase (.1.2) AT1G70580 482 / 7e-167 GGT2, AOAT2 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) AT5G36160 89 / 1e-18 Tyrosine transaminase family protein (.1) AT4G11280 86 / 9e-18 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT4G26200 84 / 5e-17 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT5G51690 84 / 6e-17 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G28410 82 / 1e-16 Tyrosine transaminase family protein (.1) AT2G24850 80 / 1e-15 TAT3 tyrosine aminotransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003935 [exp] 979 / 0 AT1G72330 880 / 0.0 alanine aminotransferase 2 (.1.2.3) Lus10036850 [exp] 469 / 2e-161 AT1G70580 872 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10006203 [exp] 468 / 2e-161 AT1G70580 868 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10026692 [exp] 466 / 1e-160 AT1G70580 878 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10004623 [exp] 454 / 2e-155 AT1G70580 865 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Lus10017703 [exp] 100 / 2e-22 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033659 [exp] 97 / 2e-21 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10032654 [exp] 92 / 9e-20 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 91 / 5e-19 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G162800 [exp] 846 / 0 AT1G17290 828 / 0.0 alanine aminotransferas (.1) Potri.003G072600 [exp] 846 / 0 AT1G72330 838 / 0.0 alanine aminotransferase 2 (.1.2.3) Potri.008G187400 [exp] 471 / 6e-163 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.010G045100 [exp] 467 / 5e-161 AT1G70580 895 / 0.0 GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2, alanine-2-oxoglutarate aminotransferase 2 (.1.2.3.4) Potri.017G014100 [exp] 93 / 4e-20 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 90 / 4e-19 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 89 / 1e-18 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G137950 [exp] 87 / 3e-18 AT5G53970 504 / 2e-178 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 87 / 4e-18 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.018G067000 [exp] 86 / 1e-17 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10037455 pacid=23167175 polypeptide=Lus10037455 locus=Lus10037455.g ID=Lus10037455.BGIv1.0 annot-version=v1.0 ATGCGGAGATCAGTAATCCGAAGGTCCAAATCCACTCTCCTCCACATCCTCAATCAACATCACCTTTCTCCCCACCACCGCTTAATCCCTCCTCCTCCTC CTTCTTCCTCCCCTCTCCTCCTCTTCCTCCGCCGCTTCTCATCGTCCTCCCCTTCTCCTCCCGAGATGCCGAACCCCGTCTCCCTCGACACCATCAACCC CAAGGTGTTGCAATGCGAGTATGCTGTCCGTGGTGAGATTGTCAACATTGCTCAGAGCTTGCAAGAGGAGCTGAAGGCTAATCCTGGCTCTCTTCCTTTT GATGAGATAATCTATTGCAACATCGGGAACCCTCAGTCTCTTGGTCAGCTTCCGATAACCTACTTCCGAGAGGTTCTTGCACTGTGCGACCATCCTACGC TCTTGGACAAAGCTGAAACACAGGGCCTATTCAGTGCTGATTCCATAGAGCGAGCATGGCAGATTCTTGACCAAATTCCTGGGAGGGCAACTGGAGCATA TAGCCATAGTCAGGGTATCAAAGGATTACGTGATACAATTGCTGCTGGCATTGAAGCTCGTGATGGCTTTCCTTGTAATCCAAATGATATCTTTCTCACT GACGGTGCAAGTCCAGCTGTACACATGATGATGCAACTACTGATCAGCTCTGAAAAAGATGGGATCCTATGCCCCATTCCTCAATACCCTTTGTACTCTG CTTCGATTGCTCTCCACGGTGGTACTCTGGTCCCTTACTATCTTGACGAAGAAACTGGATGGGGTTTGGAAATTTCCGAACTGAAGAAGCAATTGGAGGA GGCTAGATCGAAGGGAATCTCTGTTAGGGCTCTGGTTGTGATAAATCCAGGCAACCCAACTGGGCAAGTACTTGCCGAGCAAAACCAGCGGGACATTGTA GACTTCTGCAAGAAAGAGGGCCTTGTTCTTTTAGCAGATGAGGTTTATCAGGAGAATGTCTATGTTCCTGAGAAGAAGTTCCATTCATTTAAGAAAATTT CCCGGGCTATGGGCTGTAGCGATAAGGATTTGCCTCTAGTATCTTTTCAGTCAGTATCAAAAGGGTATCATGGTGAATGTGGGAAGAGAGGAGGTTACAT GGAGGTCACCGGGTTTACTCCTGAAGTAAGAGAGCAAATTTATAAAGTGGCGTCTGTGAATCTTTGCTCTAATATTTCTGGCCAAATCCTTGCGAGTCTC GTCATGAGCCCACCTAAGGTTGGAGATGAATCCTATGATTCATATTCTGCAGAAAAAGACGGGATCCTTTCATCACTGGCAAGGCGTGCCAAGACACTCG AGGAAGCACTCAACAGTTTAGAAGGCGTAACTTGCAACAGAGCAGAGGGGGCTATGTATCTTTTCCCACGAATCAGGTTGCCTGCAAAGGCAATCAAAGC TGCAGAAGCTGCAAAAACAGCTCCTGACTTGTTCTACTGCCGTAATCTGCTCAAAGCGACCGGAGTGGTTGTGGTCCCTGGTTCCGGATTCCGCCAAGTT CCGGGAACGTGGCACTTCAGGTGCACCATTCTGCCCCAGGAAGACAAGATACCAGCGATCGTGTCACGACTGACAGAGTTCCACAAGAGCTTCATGAACG AGTACCGTGATTAA
AA sequence Show only first row Show all	>Lus10037455 pacid=23167175 polypeptide=Lus10037455 locus=Lus10037455.g ID=Lus10037455.BGIv1.0 annot-version=v1.0 MRRSVIRRSKSTLLHILNQHHLSPHHRLIPPPPPSSSPLLLFLRRFSSSSPSPPEMPNPVSLDTINPKVLQCEYAVRGEIVNIAQSLQEELKANPGSLPF DEIIYCNIGNPQSLGQLPITYFREVLALCDHPTLLDKAETQGLFSADSIERAWQILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPCNPNDIFLT DGASPAVHMMMQLLISSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEETGWGLEISELKKQLEEARSKGISVRALVVINPGNPTGQVLAEQNQRDIV DFCKKEGLVLLADEVYQENVYVPEKKFHSFKKISRAMGCSDKDLPLVSFQSVSKGYHGECGKRGGYMEVTGFTPEVREQIYKVASVNLCSNISGQILASL VMSPPKVGDESYDSYSAEKDGILSSLARRAKTLEEALNSLEGVTCNRAEGAMYLFPRIRLPAKAIKAAEAAKTAPDLFYCRNLLKATGVVVVPGSGFRQV PGTWHFRCTILPQEDKIPAIVSRLTEFHKSFMNEYRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10037455 [exp]	0	1
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	2.8	0.9465
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	10.2	0.9226
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	12.4	0.9538
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Lus10040239 [exp]	12.8	0.9013
					Lus10018421 [exp]	16.0	0.9486
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	16.4	0.9512
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	18.9	0.9156
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	19.2	0.9302
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	20.0	0.9376
AT5G08570			Pyruvate kinase family protein...		Lus10013449 [exp]	20.8	0.9345

Compare expression of checked genes

Lus10037455 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.