Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53840 460 / 9e-160 ATPME1 pectin methylesterase 1 (.1) AT3G14300 423 / 6e-141 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT5G04960 409 / 3e-140 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 394 / 2e-134 RHS12 root hair specific 12 (.1) AT4G33220 361 / 8e-122 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G43270 355 / 2e-119 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 354 / 1e-118 ATPMEPCRA methylesterase PCR A (.1) AT1G53830 352 / 2e-117 ATPME2 pectin methylesterase 2 (.1) AT3G14310 352 / 3e-117 ATPME3 pectin methylesterase 3 (.1) AT4G02330 350 / 7e-117 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003934 [exp] 681 / 0 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10033399 [exp] 376 / 4e-127 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10038917 [exp] 366 / 1e-123 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 364 / 1e-122 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10039314 [exp] 357 / 5e-120 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10008203 [exp] 353 / 3e-118 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 352 / 4e-118 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10017375 [exp] 345 / 2e-116 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 340 / 2e-114 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072700 [exp] 528 / 0 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 455 / 1e-158 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 437 / 6e-151 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.010G247600 [exp] 389 / 4e-132 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 382 / 1e-129 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.011G025400 [exp] 369 / 1e-124 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.001G162400 [exp] 364 / 2e-122 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.014G067100 [exp] 362 / 3e-122 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 363 / 5e-122 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 358 / 8e-121 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10037456 pacid=23167237 polypeptide=Lus10037456 locus=Lus10037456.g ID=Lus10037456.BGIv1.0 annot-version=v1.0 ATGACAACGACGGCGGAGGATTCTACATCGGATTTGAAATTAGGTTTTCCTCGGTGGCTGAGCAGCGGGGACAGGAGGCTGCTGCAGGCGATTGGCAGGG GCGGCGGAGCGATGATGCCGAATGTGACGGTGGCGAAGGATGGGACGGGGAATTTCACGACGATTAGGGAGGCTGTGCCGGGGATACCGAAGAAGAGTCA GTGGAGGTATGTTATTTACATTAAGGAAGGAGTGTATAAGGAGAATGTGATTCTGGAGAAGCAACTGTGGAACGTGGTGGTCTACGGCGACGGCAAGGAC AAGACCGTCATCTCCGGCAGTCTGAATTTCATCGACGGCACGCCTACTTTCTCTACTCCAACTTTCGCTGCGGTGGGGAAAGGGTTCATGGCAAGAGACA TAAAGTTCATAAACACGGCCGGACCCTCGAAGCACCAAGCCGTCGCCTTCCGGTCCGGAGCCGACATGTCCGTCTACTACAAATGCGCCTTCGACGCCTA CCAAGACACCCTCTACCCGCACTCGAACCGCCAGTTCTACAAAGACTGCGACATCACGGGCACTATCGACTTCATCTTTGGCAACGCGGCCGTAGTCTTT CAAGGCTGCAACATCATGCCCAGGCAGCCGTTACCAAACCAATTCAACACCATCACAGCACAGGGTAAAAAAGACCCGAATCAGAACACAGGGATATCAA TCCAGAAATGCTCGTTCTTTCCTCTGGAGAAGAATCTAACGGCCAGGACTTACTTGGGGCGGCCGTGGAAGGACTTCTCGACGACGGTGATCATGCAGTC GTCGATTGATGGGTTTGTGAGCCCGTTGGGCTGGCTGTCGTGGGTTTCTGGAGTGGACCCACCGAACACTATTTTCTACGCGGAGTATCAGAATACTGGG CCTGGATCTGGGGTGGCGGGAAGGGTTAAGTGGGCCGGGTATAGACCTGGGCTTACGAGTGATGATGCTGCTAAGTTTACGGTTGAATCGTTTCTGCATG GGAGTACGTGGCTGCCTGCCACGTCGGTTGCTTTCGATTCCACGTTGTGA
AA sequence Show only first row Show all	>Lus10037456 pacid=23167237 polypeptide=Lus10037456 locus=Lus10037456.g ID=Lus10037456.BGIv1.0 annot-version=v1.0 MTTTAEDSTSDLKLGFPRWLSSGDRRLLQAIGRGGGAMMPNVTVAKDGTGNFTTIREAVPGIPKKSQWRYVIYIKEGVYKENVILEKQLWNVVVYGDGKD KTVISGSLNFIDGTPTFSTPTFAAVGKGFMARDIKFINTAGPSKHQAVAFRSGADMSVYYKCAFDAYQDTLYPHSNRQFYKDCDITGTIDFIFGNAAVVF QGCNIMPRQPLPNQFNTITAQGKKDPNQNTGISIQKCSFFPLEKNLTARTYLGRPWKDFSTTVIMQSSIDGFVSPLGWLSWVSGVDPPNTIFYAEYQNTG PGSGVAGRVKWAGYRPGLTSDDAAKFTVESFLHGSTWLPATSVAFDSTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037456 [exp]	0	1
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	2.2	0.8520
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	3.2	0.8458
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	5.5	0.8454
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	6.3	0.8249
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	8.5	0.8250
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	12.6	0.7957
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10033733 [exp]	14.5	0.8157
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	15.5	0.7861
AT4G36750			Quinone reductase family prote...		Lus10014325 [exp]	18.2	0.7876
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	19.4	0.7490

Compare expression of checked genes

Lus10037456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.