Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53840 225 / 4e-69 ATPME1 pectin methylesterase 1 (.1) AT3G14300 203 / 6e-59 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT3G47670 88 / 6e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G05610 86 / 1e-18 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10710 86 / 3e-18 RHS12 root hair specific 12 (.1) AT5G04960 85 / 3e-18 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 77 / 2e-15 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT1G53830 75 / 1e-14 ATPME2 pectin methylesterase 2 (.1) AT5G49180 70 / 4e-13 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 67 / 5e-12 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003934 [exp] 487 / 4e-170 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10026435 [exp] 124 / 6e-36 AT1G53840 65 / 3e-14 pectin methylesterase 1 (.1) Lus10008625 [exp] 98 / 6e-24 AT3G47670 146 / 8e-43 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10042193 [exp] 98 / 1e-22 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10020909 [exp] 84 / 1e-17 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10034859 [exp] 83 / 2e-17 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10033399 [exp] 82 / 4e-17 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10033466 [exp] 75 / 1e-14 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006940 [exp] 73 / 5e-14 AT3G05610 569 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072700 [exp] 286 / 2e-92 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 248 / 2e-78 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.001G108200 [exp] 142 / 1e-40 AT3G47670 122 / 1e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G123500 [exp] 132 / 8e-37 AT3G47670 141 / 8e-41 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.006G134800 [exp] 134 / 3e-35 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.010G247600 [exp] 109 / 1e-26 AT3G10710 609 / 0.0 root hair specific 12 (.1) Potri.008G011200 [exp] 92 / 2e-20 AT3G10710 621 / 0.0 root hair specific 12 (.1) Potri.010G010464 [exp] 86 / 1e-18 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 81 / 6e-17 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 80 / 2e-16 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10037457 pacid=23167238 polypeptide=Lus10037457 locus=Lus10037456.g ID=Lus10037457.BGIv1.0 annot-version=v1.0 ATGGATACGATGAAGTCATTCAAAGGGTACGGCAAGGTGGACGAAGCAGAGGAGCTCGCCTTCCGACAGAAGACTCGCCGCCGTTACATAATCTTCGGCG TCTCCTCCGTCATCCTCCTCGCAGTCATAATCGCCGCCGTCGCCGGAGTCGTAGTCCACAACCGCAAATCGGGAAATGGGTCCTCATCCGACGCTGACAA GCTCCCTCCGACTGAATCACCCGCAGCATCGCTCAAGGCCGTGTGCAGTGTCACTGAGTACCCTGCCTCCTGCTACTCCAGCATCTCGGAGCTCGAGGCT GGCTCCAACTCCTCCGATCCGGAACTGCTCTTCAAGCTCTCACTGCAAGTCGCCATGAACGAGCTCTCAAAGCTGAAGGACTTCCCGTCCAAGATCCAAA TCCCGGAGAACGACACCGCGATTCAGCTGGCGGTGGAGGTCTGCTCCACTGTGTTCGACGACAGCTTGGATCGGCTCAACGACTCGATTGCTGCCATGGC AGCTGATGCTGAAGGAGGAGGAGGTCAGAATAAGCAGAAGCAGATGCTGTCTCAGGAAAGAATCGACGATCTGAAGACGTGGCTGAGCACGGCGGTTACA GATCTGGACACTTGTTTGGATGCGATGCAGATGAACGAGACGGAGCACTCCGGATCGGAGGCGATTTTGAAGCAATTGGAGACGGCAATGGAGAATTCGA CGGAATTCGTTAGCAATAGTCTTGCAATCGTGAACAAGGTCATGAGCTTGCTCTCCGATTTCAACATCCCGATCCACAAGAGAAGGAAGCTAATGACAAC GACGGCGGAGGATTCTACATCGGATTTGAAATTAGGTTTTCCTCGGTGGCTGAGCAGCGGGGACAGGAGGCTGCTGCAGGCGATTGGCAGGGGCGGCGGG GGGGTGGTGGCGCATGTGGCCACAAGAGAAGGAAGCTAA
AA sequence Show only first row Show all	>Lus10037457 pacid=23167238 polypeptide=Lus10037457 locus=Lus10037456.g ID=Lus10037457.BGIv1.0 annot-version=v1.0 MDTMKSFKGYGKVDEAEELAFRQKTRRRYIIFGVSSVILLAVIIAAVAGVVVHNRKSGNGSSSDADKLPPTESPAASLKAVCSVTEYPASCYSSISELEA GSNSSDPELLFKLSLQVAMNELSKLKDFPSKIQIPENDTAIQLAVEVCSTVFDDSLDRLNDSIAAMAADAEGGGGQNKQKQMLSQERIDDLKTWLSTAVT DLDTCLDAMQMNETEHSGSEAILKQLETAMENSTEFVSNSLAIVNKVMSLLSDFNIPIHKRRKLMTTTAEDSTSDLKLGFPRWLSSGDRRLLQAIGRGGG GVVAHVATREGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	0	1
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	1.0	0.8941
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	1.7	0.8656
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037456 [exp]	3.2	0.8458
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	4.2	0.8719
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10023378 [exp]	5.3	0.8459
AT3G43220			Phosphoinositide phosphatase f...		Lus10027650 [exp]	7.2	0.8036
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	7.5	0.8218
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10001857 [exp]	8.5	0.8039
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	12.0	0.8423
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	12.7	0.7683

Compare expression of checked genes

Lus10037457 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.